CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86945	Canola	cytosol	99.17	99.17
Bra010045.1-P	Field mustard	cytosol	96.68	96.2
CDY30688	Canola	cytosol	91.53	91.23
AT5G61970.1	Thale cress	cytosol	90.2	89.75
PGSC0003DMT400040071	Potato	cytosol	62.96	76.57
Solyc03g093970.2.1	Tomato	cytosol, plastid	75.25	75.25
VIT_17s0000g00300.t01	Wine grape	cytosol	74.25	75.13
Solyc02g062810.2.1	Tomato	nucleus	74.75	74.75
GSMUA_Achr9P05240_001	Banana	cytosol	71.76	71.88
KRH59740	Soybean	cytosol, endoplasmic reticulum	71.59	71.48
HORVU5Hr1G042050.1	Barley	cytosol	65.95	66.06
TraesCS5A01G129400.1	Wheat	cytosol	65.28	65.5
KXG36669	Sorghum	cytosol	63.79	65.08
Os08t0323000-01	Rice	cytosol, plasma membrane	46.51	64.97
TraesCS5B01G128000.2	Wheat	cytosol	65.95	64.87
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	63.62	64.81
TraesCS5D01G136900.2	Wheat	cytosol	65.28	64.22
Solyc02g062840.1.1	Tomato	extracellular	9.97	61.86
KRH41061	Soybean	cytosol	69.1	60.38
Solyc02g062830.1.1	Tomato	plasma membrane	12.62	51.01
Solyc04g048930.1.1	Tomato	nucleus	6.48	48.15
Zm00001d053170_P001	Maize	cytosol	10.8	47.1
Zm00001d047530_P002	Maize	plastid	13.62	38.5
Os08t0323266-00	Rice	cytosol	4.98	38.46
Zm00001d031206_P001	Maize	cytosol	10.8	36.11

Protein Annotations

Gene3D:1.10.3450.40	MapMan:23.3.1.1.6	GO:A0A078EGJ8	EnsemblPlants:CDY00241	ProteinID:CDY00241	ProteinID:CDY00241.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030942	EnsemblPlantsGene:GSBRNA2T00109791001	InterPro:IPR038253
PFAM:PF16969	PIRSF:PIRSF038995	PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf
UniParc:UPI0004EE0861	SEG:seg	:	:	:	:

Description

BnaA06g21420D

Coordinates

chrLK031917:+:357811..362133

Molecular Weight (calculated)

68688.2 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.582

Length

602 amino acids

Sequence
(BLAST)

001: MGKKENEMSA MEIDDPKSDG SEQILPRFSM NVLQLMKTSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMT
101: ERAWSHAMDK RQLPDGPNAR QRIYLIGRLR KAVKWASLFS SLCSNKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETALAC FRNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIEYCKHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQD FEKELQGPAA
301: ESLPAEKKLT IYDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNKKRDDK TEKVTKPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRKSL AFRAERCFYL AKSYSLAGKR VEAYALYCRA RSLAEDALSK FQSIANKDEG TIQELKALDK ECRANSCIEH
501: ATGIMEEEKA PEKLSKKIST ISLNDTATKV EKYLVDKLEV YESAVGDANT KMAPKIERFP PAFQSIPRNP IVLDLAYNCI EFPVLDERKK KVQRGFISRL
601: WG

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.