Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022073.1-P | Field mustard | cytosol | 91.79 | 92.13 |
| CDY43620 | Canola | cytosol | 91.42 | 91.76 |
| CDY37158 | Canola | cytosol | 90.3 | 90.64 |
| Bra024989.1-P | Field mustard | cytosol | 91.04 | 90.37 |
| CDY33485 | Canola | cytosol | 91.04 | 90.37 |
| CDX77702 | Canola | cytosol | 91.04 | 90.04 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 19.03 | 80.95 |
| PGSC0003DMT400043211 | Potato | cytosol | 82.09 | 80.59 |
| Solyc06g062360.2.1 | Tomato | cytosol | 81.34 | 79.85 |
| KRH07229 | Soybean | endoplasmic reticulum | 80.97 | 79.49 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 80.97 | 79.2 |
| Solyc08g076540.2.1 | Tomato | nucleus | 80.6 | 79.12 |
| KRH07476 | Soybean | cytosol | 80.22 | 78.75 |
| PGSC0003DMT400038357 | Potato | cytosol | 79.85 | 78.39 |
| KRH39570 | Soybean | cytosol | 79.85 | 78.39 |
| KRH74378 | Soybean | cytosol | 79.48 | 78.02 |
| Solyc11g066910.1.1 | Tomato | plastid | 79.1 | 77.66 |
| Solyc08g005200.2.1 | Tomato | cytosol | 78.73 | 77.29 |
| AT4G17730.2 | Thale cress | cytosol | 74.63 | 76.34 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 74.25 | 72.89 |
| Os01t0254900-01 | Rice | plasma membrane | 74.63 | 71.43 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 73.51 | 71.12 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 73.13 | 70.76 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 72.01 | 70.7 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 73.51 | 70.61 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 71.64 | 69.31 |
| EES02705 | Sorghum | cytosol | 72.01 | 68.93 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 70.15 | 68.86 |
| PGSC0003DMT400068230 | Potato | cytosol | 72.39 | 64.03 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 62.31 | 59.86 |
| Zm00001d040286_P003 | Maize | cytosol | 63.06 | 56.52 |
| Os02t0702800-01 | Rice | cytosol | 54.85 | 55.06 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 54.1 | 54.51 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 54.1 | 54.51 |
| PGSC0003DMT400045973 | Potato | cytosol | 26.49 | 52.99 |
| EES05663 | Sorghum | cytosol | 52.24 | 52.24 |
| Zm00001d017756_P001 | Maize | extracellular | 47.39 | 51.21 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 54.1 | 49.66 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 49.63 | 49.44 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 50.0 | 48.38 |
| Zm00001d008333_P003 | Maize | cytosol | 53.73 | 44.31 |
| Zm00001d039536_P001 | Maize | cytosol | 39.93 | 40.68 |
| AT1G32270.1 | Thale cress | nucleus | 52.61 | 33.89 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:834730 | UniProt:A0A178UDT6 | ProteinID:AED95437.1 |
| EMBL:AF385695 | ArrayExpress:AT5G46860 | EnsemblPlantsGene:AT5G46860 | RefSeq:AT5G46860 | TAIR:AT5G46860 | RefSeq:AT5G46860-TAIR-G |
| EnsemblPlants:AT5G46860.1 | TAIR:AT5G46860.1 | EMBL:AY072015 | EMBL:AY085121 | EMBL:AY133666 | Unigene:At.22922 |
| ProteinID:BAA97220.1 | GO:GO:0000149 | GO:GO:0000325 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009660 | GO:GO:0009705 | GO:GO:0009959 |
| GO:GO:0009987 | GO:GO:0010118 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 |
| RefSeq:NP_568671.1 | ProteinID:OAO91367.1 | UniProt:P93654 | PFAM:PF05739 | PFAM:PF14523 | PO:PO:0000013 |
| PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | EMBL:U88045 | UniParc:UPI00001362DD | Symbol:VAM3 |
| SEG:seg | : | : | : | : | : |
Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
Coordinates
chr5:-:19012021..19014110
Molecular Weight (calculated)
29483.0 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.373
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.