Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01290 | Canola | cytosol | 38.46 | 59.48 |
| Bra023256.1-P | Field mustard | cytosol | 37.26 | 58.94 |
| CDX93845 | Canola | cytosol | 36.78 | 58.17 |
| AT5G46860.1 | Thale cress | cytosol | 33.89 | 52.61 |
| Solyc11g066910.1.1 | Tomato | plastid | 34.38 | 52.38 |
| Solyc06g062360.2.1 | Tomato | cytosol | 34.13 | 52.01 |
| PGSC0003DMT400043211 | Potato | cytosol | 34.13 | 52.01 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 34.13 | 51.82 |
| Solyc08g005200.2.1 | Tomato | cytosol | 33.65 | 51.28 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 34.38 | 51.25 |
| KRH74378 | Soybean | cytosol | 33.41 | 50.92 |
| KRH07229 | Soybean | endoplasmic reticulum | 33.41 | 50.92 |
| AT4G17730.2 | Thale cress | cytosol | 31.97 | 50.76 |
| KRH07476 | Soybean | cytosol | 33.17 | 50.55 |
| Solyc08g076540.2.1 | Tomato | nucleus | 32.93 | 50.18 |
| PGSC0003DMT400038357 | Potato | cytosol | 32.45 | 49.45 |
| Os01t0254900-01 | Rice | plasma membrane | 33.17 | 49.29 |
| KRH39570 | Soybean | cytosol | 32.21 | 49.08 |
| EES02705 | Sorghum | cytosol | 32.45 | 48.21 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 31.97 | 48.01 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 31.49 | 47.99 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 31.49 | 47.29 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 31.01 | 46.57 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 30.05 | 45.79 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 30.05 | 45.79 |
| PGSC0003DMT400068230 | Potato | cytosol | 32.93 | 45.21 |
| PGSC0003DMT400045973 | Potato | cytosol | 14.42 | 44.78 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 28.37 | 42.29 |
| Zm00001d040286_P003 | Maize | cytosol | 30.05 | 41.81 |
| Os02t0702800-01 | Rice | cytosol | 24.52 | 38.2 |
| Zm00001d017756_P001 | Maize | extracellular | 22.36 | 37.5 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 23.8 | 37.22 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 23.8 | 37.22 |
| EES05663 | Sorghum | cytosol | 23.56 | 36.57 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 23.08 | 35.69 |
| Zm00001d039536_P001 | Maize | cytosol | 22.12 | 34.98 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 23.08 | 34.66 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 24.04 | 34.25 |
| Zm00001d008333_P003 | Maize | cytosol | 25.0 | 32.0 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 3.85 | 25.4 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:840119 | ProteinID:AAF81323.1 | ProteinID:AAG60178.1 |
| ProteinID:AEE31458.1 | ArrayExpress:AT1G32270 | EnsemblPlantsGene:AT1G32270 | RefSeq:AT1G32270 | TAIR:AT1G32270 | RefSeq:AT1G32270-TAIR-G |
| EnsemblPlants:AT1G32270.1 | TAIR:AT1G32270.1 | Symbol:ATSYP24 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0012505 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 |
| GO:GO:0048278 | InterPro:IPR000727 | InterPro:LEA_2 | RefSeq:NP_174506.1 | PFAM:PF03168 | PFAM:PF05739 |
| PFAM:PF14523 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009047 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF38 | UniProt:Q9C615 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin_N |
| InterPro:T_SNARE_dom | UniParc:UPI00000A90E6 | SEG:seg | : | : | : |
Description
SYP24Putative syntaxin-24 [Source:UniProtKB/Swiss-Prot;Acc:Q9C615]
Coordinates
chr1:+:11642593..11645202
Molecular Weight (calculated)
47631.2 Da
IEP (calculated)
8.963
GRAVY (calculated)
-0.538
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSNDVKFQ VYDAELTHFD LESNNNLQYS LSLNLSIRNS KSSIGIHYDR FEATVYYMNQ RLGAVPMPLF YLGSKNTMLL RALFEGQTLV LLKGNERKKF
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLLFSC SLLLFFFLSG DLCRCVCVGS ENPRLNPTRR KAWCEEEDEE QRKKQQKKKT MSEKRRREEK
401: KVNKPNGFVF CVLGHK
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLLFSC SLLLFFFLSG DLCRCVCVGS ENPRLNPTRR KAWCEEEDEE QRKKQQKKKT MSEKRRREEK
401: KVNKPNGFVF CVLGHK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.