Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- vacuole 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g066910.1.1 | Tomato | plastid | 81.52 | 90.48 |
| PGSC0003DMT400043211 | Potato | cytosol | 77.89 | 86.45 |
| PGSC0003DMT400038357 | Potato | cytosol | 75.58 | 83.88 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 17.16 | 82.54 |
| KRH74378 | Soybean | cytosol | 71.95 | 79.85 |
| KRH07229 | Soybean | endoplasmic reticulum | 71.62 | 79.49 |
| KRH39570 | Soybean | cytosol | 71.29 | 79.12 |
| KRH07476 | Soybean | cytosol | 71.29 | 79.12 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 70.63 | 78.1 |
| Bra022073.1-P | Field mustard | cytosol | 64.69 | 73.41 |
| Bra040178.1-P | Field mustard | cytosol | 66.34 | 72.83 |
| Bra023256.1-P | Field mustard | cytosol | 63.04 | 72.62 |
| AT5G46860.1 | Thale cress | cytosol | 64.03 | 72.39 |
| Bra024989.1-P | Field mustard | cytosol | 64.36 | 72.22 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 64.69 | 71.79 |
| AT4G17730.2 | Thale cress | cytosol | 61.06 | 70.61 |
| Bra012645.1-P | Field mustard | cytosol | 63.37 | 69.06 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 61.39 | 68.13 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 61.06 | 67.77 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 61.72 | 67.03 |
| Os01t0254900-01 | Rice | plasma membrane | 61.72 | 66.79 |
| EES02705 | Sorghum | cytosol | 61.72 | 66.79 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 60.4 | 66.06 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 59.74 | 65.34 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 59.74 | 65.34 |
| PGSC0003DMT400045973 | Potato | cytosol | 28.05 | 63.43 |
| Zm00001d040286_P003 | Maize | cytosol | 57.76 | 58.53 |
| Os02t0702800-01 | Rice | cytosol | 47.85 | 54.31 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 45.87 | 51.67 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 45.21 | 51.5 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 45.21 | 51.5 |
| Zm00001d017756_P001 | Maize | extracellular | 41.91 | 51.21 |
| EES05663 | Sorghum | cytosol | 44.88 | 50.75 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 45.87 | 50.18 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 47.19 | 48.97 |
| Zm00001d008333_P003 | Maize | cytosol | 48.84 | 45.54 |
| Zm00001d039536_P001 | Maize | cytosol | 36.96 | 42.59 |
| PGSC0003DMT400069241 | Potato | cytosol | 35.64 | 40.6 |
| AT1G32270.1 | Thale cress | nucleus | 45.21 | 32.93 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| InterPro:IPR000727 | UniProt:M1CIN3 | PFAM:PF05739 | PFAM:PF14523 | EnsemblPlantsGene:PGSC0003DMG400026526 | PGSC:PGSC0003DMG400026526 |
| EnsemblPlants:PGSC0003DMT400068230 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | InterPro:T_SNARE_dom |
| UniParc:UPI00029640A1 | SEG:seg | : | : | : | : |
Description
Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400026526]
Coordinates
chr11:+:39806824..39811401
Molecular Weight (calculated)
33452.7 Da
IEP (calculated)
7.701
GRAVY (calculated)
-0.438
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLHAGR SSGPRRSNVN GKQDPTQAMA SGIFQINTAV STFQRLVNTL GTPKDTPELR DKLHKTRLHI GQLVKDTSAK LKQASETDHR IEVSASKKIT
101: DAKLAKDFQA VLKEFQKAQR LAAERETSYS PVVPPAVLPS SYTDSEIDAS SDKGQEQRAL LVESRRQEVV LLDNEISFNE AIIEERDQGI QEVQQQIGEV
201: NEIFKDLAVL VHEQGTMIDD IGSNIENSHA ATAQGRTQLA KAAKTQRSNS SLVNLTYFTL LHTKDKSVGL VCLSMLYSML PGLSKNVNGC VSDSPKVLYF
301: LRI
101: DAKLAKDFQA VLKEFQKAQR LAAERETSYS PVVPPAVLPS SYTDSEIDAS SDKGQEQRAL LVESRRQEVV LLDNEISFNE AIIEERDQGI QEVQQQIGEV
201: NEIFKDLAVL VHEQGTMIDD IGSNIENSHA ATAQGRTQLA KAAKTQRSNS SLVNLTYFTL LHTKDKSVGL VCLSMLYSML PGLSKNVNGC VSDSPKVLYF
301: LRI
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.