Factsheet for PGSC0003DMT400033284

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030470	Potato	cytosol	37.76	84.38
PGSC0003DMT400029834	Potato	cytosol	37.06	82.81
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	74.13	38.41
AT2G27700.2	Thale cress	cytosol	52.45	15.62
Solyc03g058380.2.1	Tomato	nucleus	75.52	14.19
PGSC0003DMT400071616	Potato	cytosol	68.53	13.98
CDX81960	Canola	cytosol	27.27	13.98
Bra031112.1-P	Field mustard	cytosol	27.97	13.61
CDY13882	Canola	cytosol	27.97	13.61
CDX81961	Canola	cytosol	27.97	13.56
TraesCS7B01G382100.1	Wheat	cytosol	38.46	10.6
GSMUA_Achr5P09710_001	Banana	cytosol	61.54	9.81
Solyc03g058350.2.1	Tomato	nucleus	75.52	9.34
CDY49760	Canola	plastid	27.27	8.94
CDY33673	Canola	cytosol	61.54	8.73
CDY13881	Canola	cytosol	27.27	8.59
Bra016430.1-P	Field mustard	cytosol	61.54	8.5
CDY45947	Canola	nucleus	65.73	8.2
Bra031113.1-P	Field mustard	cytosol	25.87	8.15
AT1G21160.1	Thale cress	cytosol	60.84	7.97
CDY20385	Canola	nucleus	65.73	7.72
CDX96600	Canola	cytosol	52.45	7.49
Bra008279.1-P	Field mustard	nucleus	65.73	7.41
PGSC0003DMT400079119	Potato	nucleus	69.23	7.4
OQU79180	Sorghum	nucleus	44.06	7.33
AT1G76810.1	Thale cress	nucleus	65.73	7.26
KRH35157	Soybean	nucleus	67.83	7.22
VIT_18s0076g00310.t01	Wine grape	nucleus	67.83	7.17
KRG91641	Soybean	nucleus	67.83	7.16
Os05t0592600-01	Rice	nucleus	59.44	7.04
HORVU1Hr1G094740.1	Barley	nucleus	60.14	6.67
TraesCS1A01G438600.2	Wheat	nucleus	60.14	6.66
KXG22680	Sorghum	nucleus	60.14	6.65
TraesCS1D01G446400.1	Wheat	golgi	60.14	6.64
TraesCS7A01G479800.2	Wheat	mitochondrion, plastid	38.46	6.63
TraesCS1B01G472500.1	Wheat	nucleus	60.14	6.62
Zm00001d009749_P001	Maize	nucleus	59.44	6.57
AT1G76720.2	Thale cress	cytosol	53.15	6.21
PGSC0003DMT400013995	Potato	nucleus	55.94	6.18
TraesCS1D01G446900.2	Wheat	nucleus	60.14	6.13
KRG88874	Soybean	cytosol	13.29	4.91
GSMUA_Achr1P05220_001	Banana	nucleus	60.84	4.79
PGSC0003DMT400031711	Potato	mitochondrion	16.78	3.26
PGSC0003DMT400079833	Potato	plastid	18.88	2.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400033284	EnsemblPlantsGene:PGSC0003DMG400012783	Gene3D:3.40.50.10050	InterPro:IPR036925	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3
InterPro:TIF_IF2_dom3_sf	PANTHER:PTHR43381	PANTHER:PTHR43381:SF4	PFAM:PF11987	PGSC:PGSC0003DMG400012783	SEG:seg
SUPFAM:SSF52156	UniParc:UPI0002951C33	UniProt:M1AYW6	MapMan:35.2	:	:

Description

Translation initiation factor if-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400012783]

Coordinates

chr12:+:45583302..45583733

Molecular Weight (calculated)

15963.7 Da

IEP (calculated)

8.819

GRAVY (calculated)

-0.087

Length

143 amino acids

Sequence
(BLAST)

001: MKEAVMEDMK SVMSRIDKSM EDMKSVMSRI DKTGEGVYVQ ATTLGSLEAL LEFLKTPGVS IPVSGIGIGP VHKKNVIKAS VMLEKKKEYA TILAFDVKVT
101: QGARELSDEL GVKVFMANII YHLFDQFKAY IDTIKEEKRK EVA

Best Arabidopsis Sequence Match ( AT1G21160.1 )
(BLAST)

0001: MDPRNSSAWG GGDGLPLISS MGGVESKNRC CVTDDDGSIG TKLCEKPKAE EIDFSARKKK LKSKKGGSVS FALLDVEDDK EEAEDGDDKN PSIRSDEVVG
0101: ETSMSKKKKK DKSGKHGVCE EDDDADKILA QHGITTTVST GPEAEIALAQ PEQVASADGA VDKDGEEKTV ESATAKKKKK KKDKDKKASA SLAISSVEAK
0201: EDRQGKKDVK IKVAEKKVPK HVREKQETLA RWKEAEDGKK KEEEERLRKE EEERRIEEER EREAEEIRQK RKIRKMEKKQ EGLILTAKQK RDAAKNEAFR
0301: KRVLTDAGSL LVADKNGDSS KRPIYGNKNK LACKKANDPA SVQAKGDGET KENHAADEPC TLPDLVSVED RRVGIIESVD TEETHESVDV SQENGDEEDV
0401: WDAKTNFTIK GDSDDEEEKP QPVFKKGLKD TASKAHDSVP GADRPTVKPG GSGKPKTAAK KAMPKVDDTT RPKDTSKKDE GLVLNELAKE VEENLRSPIC
0501: CIMGHVDSGK TKLLDCIRGT NVQEGEAGGI TQQIGATFFP AENIRERTKE LQANAKLKVP GILVIDTPGH ESFTNLRSRG SNLCDLAILV VDIMRGLEPQ
0601: TIESLNLLRR RNVKFIIALN KVDRLYGWEK SKNAPIRKTM MQQTGDVVKE FKMRLNRVQN QFQEQGLNSM LYYKNREMGE TISILPASAI SGEGIPDLLL
0701: FLVQWAQKTM VEKLTYVDKV QCTVLEVKVI EGHGITVDVV LVNGVLREGD QIVVCGSQGP IVTTIRSLLT PYPMNEMRVT GTYMPHREVK AAQGIKIAAQ
0801: GLEHAIAGTA LHVIGPNEDM EEAKKNAMED IESVMNRIDK SGEGVYVQAS TLGSLEALLE FLKSSDVKIP VSGIGIGPVH KKDIMKAGVM LEKKKEFATI
0901: LAFDVKISAE ARELADKMGV KIFCDDTIYC LFDKFKSYIE GIKEEKKKET ACEAVFPCIL QILPNHIYNQ RDPIILGVKV NDGILKVGTP ICIVKRIENV
1001: RVFMDIGRVS SIKNNNNMPV DYARKGQEVA IKIIASNPEE QKMFGRHFGV DDRLISHISS RSVDVIRTNY WNELSNDEKD LVLRLKRIFK IQ

Arabidopsis Description

Eukaryotic translation initiation factor 2 (eIF-2) family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.