Factsheet for PGSC0003DMT400029834

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030470	Potato	cytosol	98.44	98.44
PGSC0003DMT400033284	Potato	cytosol	82.81	37.06
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	84.38	19.57
AT2G27700.2	Thale cress	cytosol	70.31	9.38
Bra031112.1-P	Field mustard	cytosol	37.5	8.16
CDY13882	Canola	cytosol	37.5	8.16
Solyc03g058380.2.1	Tomato	nucleus	92.19	7.75
PGSC0003DMT400071616	Potato	cytosol	82.81	7.56
CDX81960	Canola	cytosol	32.81	7.53
CDX81961	Canola	cytosol	32.81	7.12
TraesCS7B01G382100.1	Wheat	cytosol	56.25	6.94
GSMUA_Achr5P09710_001	Banana	cytosol	78.12	5.57
Solyc03g058350.2.1	Tomato	nucleus	92.19	5.1
OQU79180	Sorghum	nucleus	64.06	4.77
CDY33673	Canola	cytosol	75.0	4.76
CDX96600	Canola	cytosol	73.44	4.7
Bra016430.1-P	Field mustard	cytosol	75.0	4.64
CDY13881	Canola	cytosol	31.25	4.41
TraesCS7A01G479800.2	Wheat	mitochondrion, plastid	56.25	4.34
CDY45947	Canola	nucleus	76.56	4.27
Bra031113.1-P	Field mustard	cytosol	29.69	4.19
AT1G21160.1	Thale cress	cytosol	70.31	4.12
PGSC0003DMT400079119	Potato	nucleus	84.38	4.04
CDY20385	Canola	nucleus	76.56	4.03
AT1G76810.1	Thale cress	nucleus	81.25	4.02
Os05t0592600-01	Rice	nucleus	75.0	3.98
KRH35157	Soybean	nucleus	82.81	3.94
VIT_18s0076g00310.t01	Wine grape	nucleus	82.81	3.92
KRG91641	Soybean	nucleus	82.81	3.91
Bra008279.1-P	Field mustard	nucleus	76.56	3.86
HORVU1Hr1G094740.1	Barley	nucleus	76.56	3.8
TraesCS1A01G438600.2	Wheat	nucleus	76.56	3.8
KXG22680	Sorghum	nucleus	76.56	3.79
TraesCS1D01G446400.1	Wheat	golgi	76.56	3.78
TraesCS1B01G472500.1	Wheat	nucleus	76.56	3.77
Zm00001d009749_P001	Maize	nucleus	75.0	3.71
PGSC0003DMT400013995	Potato	nucleus	71.88	3.55
TraesCS1D01G446900.2	Wheat	nucleus	76.56	3.49
AT1G76720.2	Thale cress	cytosol	53.12	2.78
GSMUA_Achr1P05220_001	Banana	nucleus	76.56	2.7
KRG88874	Soybean	cytosol	15.62	2.58
CDY49760	Canola	plastid	15.62	2.29
PGSC0003DMT400031711	Potato	mitochondrion	21.88	1.9
PGSC0003DMT400079833	Potato	plastid	26.56	1.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400029834	EnsemblPlantsGene:PGSC0003DMG400011465	Gene3D:3.40.50.10050	InterPro:IPR036925	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3
InterPro:TIF_IF2_dom3_sf	PANTHER:PTHR43381	PANTHER:PTHR43381:SF4	PFAM:PF11987	PGSC:PGSC0003DMG400011465	SUPFAM:SSF52156
UniParc:UPI0002962666	UniProt:M1ATG2	MapMan:35.2	:	:	:

Description

Translation initiation factor if-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400011465]

Coordinates

chr1:+:46865034..46865759

Molecular Weight (calculated)

7237.0 Da

IEP (calculated)

5.634

GRAVY (calculated)

0.189

Length

64 amino acids

Sequence
(BLAST)

1: MSVGFCIGPV HKKDVMKASV MLEKKKEYAT ILAFDVKVTQ EAQELSDELG VKVFMADIIY HLFD

Best Arabidopsis Sequence Match ( AT1G76810.1 )
(BLAST)

0001: MGRKKPSARG GDAEQQPPAS SLVGATKSKK KGAQIDDDEY SIGTELSEES KVEEEKVVVI TGKKKGKKGN KKGTQQDDDD DFSDKVSAAG VKDDVPEIAF
0101: VGKKKSKGKK GGGSVSFALL DDEDEKEDNE SDGDKDDEPV ISFTGKKHAS KKGKKGGNSF AASAFDALGS DDDDTEEVHE DEEEESPITF SGKKKKSSKS
0201: SKKNTNSFTA DLLDEEEGTD ASNSRDDENT IEDEESPEVT FSGKKKSSKK KGGSVLASVG DDSVADETKT SDTKNVEVVE TGKSKKKKKN NKSGRTVQEE
0301: EDLDKLLAAL GETPAAERPA SSTPVEEKAA QPEPVAPVEN AGEKEGEEET AAAKKKKKKK EKEKEKKAAA AAAATSSVEV KEEKQEESVT EPLQPKKKDA
0401: KGKAAEKKIP KHVREMQEAL ARRQEAEERK KKEEEEKLRK EEEERRRQEE LEAQAEEAKR KRKEKEKEKL LRKKLEGKLL TAKQKTEAQK REAFKNQLLA
0501: AGGGLPVADN DGDATSSKRP IYANKKKSSR QKGIDTSVQG EDEVEPKENQ ADEQDTLGEV GLTDTGKVDL IELVNTDENS GPADVAQENG VEEDDEEDEW
0601: DAKSWGTVDL NLKGDFDDEE EEAQPVVKKE LKDAISKAHD SEPEAEKPTA KPAGTGKPLI AAVKATPEVE DATRTKRATR AKDASKKGKG LAPSESIEGE
0701: ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSS LCDLAILVVD
0801: IMHGLEPQTI ESLNLLRMRN TEFIVALNKV DRLYGWKTCK NAPIVKAMKQ QNKDVINEFN LRLKNIINEF QEQGLNTELY YKNKDMGDTF SIVPTSAISG
0901: EGVPDLLLWL VQWAQKTMVE KLTYVDEVQC TVLEVKVIEG HGTTIDVVLV NGELHEGDQI VVCGLQGPIV TTIRALLTPH PMKELRVKGT YLHYKEIKAA
1001: QGIKITAQGL EHAIAGTALH VVGPDDDIEA IKESAMEDME SVLSRIDKSG EGVYVQASTL GSLEALLEYL KSPAVKIPVS GIGIGPVHKK DVMKAGVMLE
1101: RKKEYATILA FDVKVTTEAR ELADEMGVKI FCADIIYHLF DLFKAYIENI KEEKKKESAD EAVFPCVLQI LPNCVFNKKD PIVLGVDVIE GILKIGTPIC
1201: VPGREFIDIG RIASIENNHK PVDYAKKGNK VAIKIVGSNA EEQKMFGRHF DMEDELVSHI SRRSIDILKS NYRDELSLEE WKLVVKLKNI FKIQ

Arabidopsis Description

Eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:UniProtKB/TrEMBL;Acc:F4I420]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.