Factsheet for PGSC0003DMT400071616

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029834	Potato	cytosol	7.56	82.81
PGSC0003DMT400030470	Potato	cytosol	7.42	81.25
PGSC0003DMT400033284	Potato	cytosol	13.98	68.53
AT2G27700.2	Thale cress	cytosol	45.93	67.08
CDY49760	Canola	plastid	38.8	62.39
GSMUA_Achr5P09710_001	Banana	cytosol	69.33	54.18
TraesCS7B01G382100.1	Wheat	cytosol	38.8	52.41
KRG88874	Soybean	cytosol	26.53	48.06
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	18.12	46.01
CDY33673	Canola	cytosol	64.76	45.04
CDX96600	Canola	cytosol	63.34	44.36
Bra016430.1-P	Field mustard	cytosol	64.19	43.48
CDY45947	Canola	nucleus	69.33	42.37
OQU79180	Sorghum	nucleus	50.93	41.56
CDY20385	Canola	nucleus	68.76	39.61
PGSC0003DMT400079119	Potato	nucleus	75.46	39.57
TraesCS7A01G479800.2	Wheat	mitochondrion, plastid	45.93	38.84
AT1G21160.1	Thale cress	cytosol	60.2	38.64
Bra008279.1-P	Field mustard	nucleus	69.33	38.33
VIT_18s0076g00310.t01	Wine grape	nucleus	73.89	38.31
Os05t0592600-01	Rice	nucleus	65.91	38.28
AT1G76810.1	Thale cress	nucleus	70.61	38.25
KRG91641	Soybean	nucleus	72.47	37.49
AT1G76720.2	Thale cress	cytosol	64.19	36.76
KRH35157	Soybean	nucleus	70.33	36.68
KXG22680	Sorghum	nucleus	66.76	36.19
Zm00001d009749_P001	Maize	nucleus	66.33	35.96
CDX81961	Canola	cytosol	15.12	35.93
TraesCS1A01G438600.2	Wheat	nucleus	65.91	35.79
PGSC0003DMT400013995	Potato	nucleus	65.76	35.63
HORVU1Hr1G094740.1	Barley	nucleus	65.48	35.61
TraesCS1D01G446400.1	Wheat	golgi	65.76	35.57
TraesCS1B01G472500.1	Wheat	nucleus	65.91	35.54
CDX81960	Canola	cytosol	13.41	33.69
TraesCS1D01G446900.2	Wheat	nucleus	65.19	32.55
CDY13882	Canola	cytosol	13.55	32.31
Bra031112.1-P	Field mustard	cytosol	13.55	32.31
Bra031113.1-P	Field mustard	cytosol	16.83	25.99
CDY13881	Canola	cytosol	16.55	25.55
GSMUA_Achr1P05220_001	Banana	nucleus	60.34	23.31
PGSC0003DMT400031711	Potato	mitochondrion	17.4	16.58
PGSC0003DMT400079833	Potato	plastid	20.11	14.0

Protein Annotations

MapMan:17.4.3.2	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	ncoils:Coil	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:IPR000795	InterPro:IPR036925	UniProt:M1CP22	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03144	PFAM:PF11987	EnsemblPlantsGene:PGSC0003DMG400027861	PGSC:PGSC0003DMG400027861	EnsemblPlants:PGSC0003DMT400071616	PRINTS:PR00315
PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF4	SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	UniParc:UPI000294F672	SEG:seg	:	:	:

Description

Translation initiation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027861]

Coordinates

chr4:-:69437287..69441256

Molecular Weight (calculated)

77809.2 Da

IEP (calculated)

5.512

GRAVY (calculated)

-0.186

Length

701 amino acids

Sequence
(BLAST)

001: MQENQEEIVS LEREEVKDIN SASIEEKSEV VDAKSWDDAA DLNMPGKSAF EDEEIDSDPQ PIIKKEIKAT RSAPTIPENA GSKKREPDVG VSEETSGQCE
101: YNLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NICERTKELK ADANLKVPGL LVIDTPGHES FTNLRSRGSG LCDIAILVVD
201: IMHGLERHTI ESLNLLKMRN TNFIIALNKV DRLYGWKVCH NASIVKAMKQ QSKDVQFEFR TRLTQVITEF KEQGINTELY YKNKDMGKGT FSIVPTSAIS
301: AEGIPDLLLL LVQWTAKTMS ERLTYNNIVQ CTVLEVKVVE GLGTTIDVIL VNGVLHEGDQ IVVCGMQGPI VTSIRALLTP FPMKELRVKG SYEHHKEIKA
401: SQGIKINAQG LEHAIAGTSL YIVGPDDDVE DIKEAAMKDM RSVMSRVDKC GEGVYVQAST LGSLEALLEF LKTPEVSIPV SGIGIGNVHK KDVMKASVML
501: EKKKEYATIL AFDVRVTQEA QELADEVGVK IYTADIIYHL FDQFKAHIDN LKEEKRKEVA EEVVFPCMLK IVPNCVFNKK DPIVLGVEVL EGIAKVGTPI
601: CIRQCLVDIG WIASIKNNGK PVDSAKKGQK VSIKIIGSNT EEQQKMFGRH FDIEDELVSK ISRRSIDILK ADFRVHATLQ KDLSVEDWKL VLILKALFKI
701: Q

Best Arabidopsis Sequence Match ( AT1G76810.1 )
(BLAST)

0001: MGRKKPSARG GDAEQQPPAS SLVGATKSKK KGAQIDDDEY SIGTELSEES KVEEEKVVVI TGKKKGKKGN KKGTQQDDDD DFSDKVSAAG VKDDVPEIAF
0101: VGKKKSKGKK GGGSVSFALL DDEDEKEDNE SDGDKDDEPV ISFTGKKHAS KKGKKGGNSF AASAFDALGS DDDDTEEVHE DEEEESPITF SGKKKKSSKS
0201: SKKNTNSFTA DLLDEEEGTD ASNSRDDENT IEDEESPEVT FSGKKKSSKK KGGSVLASVG DDSVADETKT SDTKNVEVVE TGKSKKKKKN NKSGRTVQEE
0301: EDLDKLLAAL GETPAAERPA SSTPVEEKAA QPEPVAPVEN AGEKEGEEET AAAKKKKKKK EKEKEKKAAA AAAATSSVEV KEEKQEESVT EPLQPKKKDA
0401: KGKAAEKKIP KHVREMQEAL ARRQEAEERK KKEEEEKLRK EEEERRRQEE LEAQAEEAKR KRKEKEKEKL LRKKLEGKLL TAKQKTEAQK REAFKNQLLA
0501: AGGGLPVADN DGDATSSKRP IYANKKKSSR QKGIDTSVQG EDEVEPKENQ ADEQDTLGEV GLTDTGKVDL IELVNTDENS GPADVAQENG VEEDDEEDEW
0601: DAKSWGTVDL NLKGDFDDEE EEAQPVVKKE LKDAISKAHD SEPEAEKPTA KPAGTGKPLI AAVKATPEVE DATRTKRATR AKDASKKGKG LAPSESIEGE
0701: ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSS LCDLAILVVD
0801: IMHGLEPQTI ESLNLLRMRN TEFIVALNKV DRLYGWKTCK NAPIVKAMKQ QNKDVINEFN LRLKNIINEF QEQGLNTELY YKNKDMGDTF SIVPTSAISG
0901: EGVPDLLLWL VQWAQKTMVE KLTYVDEVQC TVLEVKVIEG HGTTIDVVLV NGELHEGDQI VVCGLQGPIV TTIRALLTPH PMKELRVKGT YLHYKEIKAA
1001: QGIKITAQGL EHAIAGTALH VVGPDDDIEA IKESAMEDME SVLSRIDKSG EGVYVQASTL GSLEALLEYL KSPAVKIPVS GIGIGPVHKK DVMKAGVMLE
1101: RKKEYATILA FDVKVTTEAR ELADEMGVKI FCADIIYHLF DLFKAYIENI KEEKKKESAD EAVFPCVLQI LPNCVFNKKD PIVLGVDVIE GILKIGTPIC
1201: VPGREFIDIG RIASIENNHK PVDYAKKGNK VAIKIVGSNA EEQKMFGRHF DMEDELVSHI SRRSIDILKS NYRDELSLEE WKLVVKLKNI FKIQ

Arabidopsis Description

Eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:UniProtKB/TrEMBL;Acc:F4I420]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.