Factsheet for PGSC0003DMT400079833

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056020.2.1	Tomato	nucleus, plastid	97.42	97.13
CDY26262	Canola	cytosol	51.14	77.68
Os05t0575300-02	Rice	cytosol	39.03	70.3
VIT_19s0027g00130.t01	Wine grape	plastid	68.02	67.49
CDY48480	Canola	plastid	61.97	64.8
KRH43837	Soybean	nucleus, plastid	63.16	62.97
CDX83919	Canola	plastid	60.08	62.63
CDX96781	Canola	plastid	61.17	62.47
KRH13635	Soybean	nucleus	62.26	61.77
Bra025989.1-P	Field mustard	plastid	62.86	61.76
AT1G17220.1	Thale cress	plastid	62.56	61.4
Bra016612.1-P	Field mustard	plastid	61.17	60.33
GSMUA_Achr8P07210_001	Banana	plastid	53.92	56.04
GSMUA_Achr3P23270_001	Banana	plastid	53.92	55.86
TraesCS7D01G288700.1	Wheat	plastid	53.23	55.66
HORVU7Hr1G060530.1	Barley	plastid	52.93	55.35
KXG22198	Sorghum	plastid	53.23	54.97
TraesCS7A01G287900.1	Wheat	plastid	33.86	50.3
TraesCS7B01G183700.2	Wheat	plastid	32.87	48.82
Zm00001d017588_P001	Maize	plastid	19.36	46.32
PGSC0003DMT400031711	Potato	mitochondrion	23.44	32.07
PGSC0003DMT400030470	Potato	cytosol	1.69	26.56
PGSC0003DMT400029834	Potato	cytosol	1.69	26.56
PGSC0003DMT400071616	Potato	cytosol	14.0	20.11
PGSC0003DMT400033284	Potato	cytosol	2.68	18.88
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	3.48	12.68
PGSC0003DMT400079119	Potato	nucleus	16.29	12.27
PGSC0003DMT400013995	Potato	nucleus	14.9	11.59

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR036925	UniProt:M1D2I6	HAMAP:MF_00100_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	EnsemblPlantsGene:PGSC0003DMG400031088	PGSC:PGSC0003DMG400031088	EnsemblPlants:PGSC0003DMT400079833
PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	SUPFAM:SSF50447
SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI000294BE9D
SEG:seg	:	:	:	:	:

Description

Translation initiation factor IF-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400031088]

Coordinates

chr7:+:51550257..51559367

Molecular Weight (calculated)

107724.0 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.301

Length

1007 amino acids

Sequence
(BLAST)

0001: MASLVSLGSV CGCSSGQFEG SFSLVRRVSF SKNFGSVNRI WGGKRWRYVS VCRYSVTTDF IADQGTSISL DSSSSSNKDD DADLMLKPAP KPQLKPGPRP
0101: GPVLGNGPVL SSDSDGEKRN PIEEERSKVI ESLGEALETV EKLETNRKAN VSVNKASAIA RTTQRNSKPV DSDDSSNRKS KTLKSVWKKG NPIAAVQKVV
0201: KLPPKQEPMT DGGKNSESQS VAPIKPPQPP QKVQPQLLAR PSVAPPPPVI KKPVILKDVG AAAKSSPSDG IESVGKTKEL ESAGKTKERK TILVDKFASK
0301: KSAVDPMIAQ AVLAPPKFGK NAPPGKFREE FRKRSGVSGG QRRRMVDDGI PDEEASEIDV SLPGRARKGR KWTKASRKAA RLKAAQESAP VKVEILEVGE
0401: EGMPTEELAY NLATSEGEIL GLLYSKGIKP DGVQTLSNDM VKMVCKEYEV EVIDAASVKV EDMAKKKEIF DEDDLDKLED RPPVITIMGH VDHGKTTLLD
0501: HIRKTKVAAS EAGGITQGIG AYKVQVPIDT KSQICVFLDT PGHEAFGAMR ARGARVTDIA IIVVAADDGI RPQTNEAIAH AKAAGVPIVI AINKVDKDGA
0601: NPDRVMQELS TIGLMPEDWG GDVPMVKISA LKGENIDDLL ETVMLVAELQ ELKANPQRNA KGTVIEAGLD KSKGPVATFI VQNGTLKGGD VVVCGGAYGK
0701: VRALFDDKGK RVDEAGPSMP VQVIGLNNVP LAGDEFEVVE SLDIAREKAE ERAESLRSER LSEKAGDGKI TLSSFASAVS GGTGLDLHQL NIILKVDLQG
0801: SIEAVKQALQ VLPQDNVTLK FLLQATGDVS ASDVDLAVAS KAIIFGFNVR TPGSVKSYAD NKGVEIRLYK VIYDLIDDVR KAMEGLLESV EEQVPIGSAE
0901: VRAVFSSGSG RVAGCMVTEG KVVEECGIRV TRKGKVVHVG VVESLRRVKE AVKEVNAGLE CGIGVEDFDD FEVGDILEAF NSVQKRRTLE EASASMAAAL
1001: EEVGRGL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.