CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0575300-02	Rice	cytosol	48.92	85.33
Zm00001d017588_P001	Maize	plastid	33.74	78.15
TraesCS7D01G288700.1	Wheat	plastid	74.26	75.18
HORVU7Hr1G060530.1	Barley	plastid	73.85	74.77
CDY26262	Canola	cytosol	47.18	69.38
TraesCS7B01G183700.2	Wheat	plastid	47.9	68.88
TraesCS7A01G287900.1	Wheat	plastid	47.59	68.44
GSMUA_Achr8P07210_001	Banana	plastid	55.28	55.62
CDY48480	Canola	plastid	54.67	55.35
GSMUA_Achr3P23270_001	Banana	plastid	54.67	54.84
CDX96781	Canola	plastid	55.28	54.67
VIT_19s0027g00130.t01	Wine grape	plastid	56.62	54.38
KRH43837	Soybean	nucleus, plastid	56.1	54.16
KRH13635	Soybean	nucleus	56.1	53.89
PGSC0003DMT400079833	Potato	plastid	54.97	53.23
AT1G17220.1	Thale cress	plastid	56.0	53.22
CDX83919	Canola	plastid	52.72	53.21
Solyc07g056020.2.1	Tomato	nucleus, plastid	54.97	53.07
Bra025989.1-P	Field mustard	plastid	55.28	52.59
Bra016612.1-P	Field mustard	plastid	53.54	51.13
KXG26389	Sorghum	mitochondrion	23.08	31.6
OQU79180	Sorghum	nucleus	13.33	15.13
KXG22680	Sorghum	nucleus	15.38	11.6

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	UniProt:A0A1B6P940	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR036925	EnsemblPlants:KXG22198	ProteinID:KXG22198
ProteinID:KXG22198.1	HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	PRINTS:PR00315
ScanProsite:PS01176	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	EnsemblPlantsGene:SORBI_3009G170200	SUPFAM:SSF50447
SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI00081ADCD6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:52589359..52598082

Molecular Weight (calculated)

105014.0 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.272

Length

975 amino acids

Sequence
(BLAST)

001: MASPASVTNL GSNGRSGPLP AASAARRAHL VTRISFTGFD GIRRWQYEPG RLCRCMVITN LIEEKGVQFS SRGSVSVKAD DDNDLLLKPP QKPVPPQKPV
101: QLNGPPESMR TASLPDQKSA GATLDDREKV RESLDAVLEK AEKLEASSFG SADGGNLSSR QNNVPNNGPG PTLVEEGGNS RKTKTLKSVW RKGNPVPTVR
201: KVIREQPRTE SRSQSIPVAK PSVSSPSKPA PPLLSKPSVA PPPRRPVKSD TSKEKKGPIL IDKFASKRAA VDPIVPEELL DPLKPVRGPP AKVRVDRRKK
301: PDTQAGSRRR MPNDDGLVDE DTADVPISGV AVRKGRRWSK AKRRAARLSA MQAEEPVRVE ILEVGEEGML IEDLAYDLAV SESEILRFLS VRGVMLDNVQ
401: TLDKDLVKMV CMEYDVEVLE SGPVKVEEMA KKKEFLDEED LDKLEVRPPI VTIMGHVDHG KTTLLDYIRK SKVVASEAGG ITQGIGAYQV LVPVDGNPQA
501: CIFLDTPGHE AFGAMRARGA RVTDICIVVV AADDGVLPQT SEAIAHARAA GVPIIIAINK IDKEGANAER VMQELSQIGL MPEMWGGDTP MIQISALTGD
601: NVDELLETVM LVAELQELKA NPHRNAKGTV IEACLDKAKG PLATLVVQNG TLNKADIIVC GEAYGKIRAL YDDRGKLVDK AGPSNAVQVI GLNNVPLAGD
701: EFEVVDNLDV ARERANERAE ALRLERISAK AGEGKVTLSS IAASVSSAKQ TGIDTHELNV ILKVDFQGTI EAIRQAIQAL PQENVSLRFL LQAPGDVSVS
801: DVDLAVASEG IIFGFNVRAP GSVKNYAKKK SVEIRLYKVI YDLIDDLRNA MEGLLEPAEE EVPIGSAKVR AVFSSGSGKV AGCMITTGKV VQDCNVRVLR
901: KGKEVYVGSL DSLRRVKEAV KEVGAGLECG IGVDDFDEWQ EGDIVEAFNT VKKARTLEEA SATVTAALKD AGVQL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.