CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26262	Canola	cytosol	59.83	87.18
CDX96781	Canola	plastid	82.4	80.73
Os05t0575300-02	Rice	cytosol	43.79	75.67
CDY48480	Canola	plastid	73.5	73.73
AT1G17220.1	Thale cress	plastid	78.16	73.59
KRH13635	Soybean	nucleus	64.8	61.67
PGSC0003DMT400079833	Potato	plastid	62.63	60.08
Solyc07g056020.2.1	Tomato	nucleus, plastid	62.53	59.8
KRH43837	Soybean	nucleus, plastid	62.42	59.7
VIT_19s0027g00130.t01	Wine grape	plastid	62.63	59.61
GSMUA_Achr3P23270_001	Banana	plastid	58.39	58.02
GSMUA_Achr8P07210_001	Banana	plastid	57.25	57.07
KXG22198	Sorghum	plastid	53.21	52.72
HORVU7Hr1G060530.1	Barley	plastid	51.66	51.82
TraesCS7D01G288700.1	Wheat	plastid	51.45	51.61
TraesCS7A01G287900.1	Wheat	plastid	33.44	47.64
TraesCS7B01G183700.2	Wheat	plastid	33.13	47.2
Zm00001d017588_P001	Maize	plastid	20.19	46.32
CDX94227	Canola	mitochondrion, plastid	18.22	31.6
CDY25276	Canola	mitochondrion	23.91	31.39
CDY05134	Canola	mitochondrion	23.4	30.83
CDX90791	Canola	mitochondrion	22.98	30.29
CDY49760	Canola	plastid	7.66	16.97
CDY33673	Canola	cytosol	16.67	15.97
CDX96600	Canola	cytosol	16.46	15.88
CDY45947	Canola	nucleus	16.46	13.86
CDX81961	Canola	cytosol	4.04	13.22
CDY20385	Canola	nucleus	16.56	13.15
CDX81960	Canola	cytosol	3.73	12.9
CDY13881	Canola	cytosol	6.0	12.78
CDY13882	Canola	cytosol	3.73	12.24

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	GO:A0A078D6D6	EnsemblPlants:CDX83919
ProteinID:CDX83919	ProteinID:CDX83919.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00139697001	InterPro:IPR000795	InterPro:IPR036925	HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF11987	PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5
SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540	SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487
InterPro:Transl_B-barrel_sf	UniParc:UPI0004EF3BBF	SEG:seg	:	:	:

Description

BnaC08g17260D

Coordinates

chrLK031834:-:1246262..1251509

Molecular Weight (calculated)

103347.0 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.281

Length

966 amino acids

Sequence
(BLAST)

001: MPSMLVLVGT LPSLASLVSP GGGGGASVSS YALVKRVSLP RRSVKGAKKW LCRYSLSTST TDFIAEQTVS LDSNSFEGSI EEDEGEIVLK QAPKPVLKPP
101: VARVSSAPWS KEGKFDGEKE ERSKVIESLG EVLDKAERLE IPKPVSKEGG EGFKPSQPSA NSSNSKGDGF GTRKTKTMKS VWRKGDAVAA VQKVVKESPK
201: IDNKGMQGDA KSGTQLPSGP ILKDVGMASK PSVSEEVDSS SQSKERKPIL VDKFASKKKG VDPVASQTVL APTKPGKGPP SNKFRVEQRN KKNASANPRR
301: RMAAEDDADE DASELNVSIP GKGRKGRKWS KASRKAVRLQ AARDAAPVKA EILEVEEEGM SIEDLAYNLA IGEGDILGYL YSKGIRPDGV QTLDREMVRM
401: ICRDYDVEVL DADSVQVEEM AKKKESFDEE DLEKLEDRPP VITIMGHVDH GKTTLLDYIR KSKVAASEAG GITQGIGAYK VSVPVDGKLQ SCVFLDTPGH
501: EAFGAMRARG ARVTDIAIIV VAADDGIRPQ TNEAIAHAKA AGVPIVIAIN KIDKDGASPE RVMQELSSIG LMPEDWGGDV PMVQISALKG ENIDDLLETV
601: MLVAELQELK ANPHRNAKGI VIEAGLDKAK GPFATFIVQK GTLRRGDVIV CGEAFGKVRA LFDHSGERVD EAGPSIPVQV IGLNNVPIAG DEFEIVSSLD
701: VAREMAEARA VSLRDERISA KAGDGKVTLS SLASAVSAKK MSGLDLHQLN IILKVDVQGS IEAVKQALQV LPQENVTLKF LLQATGAVSN SDVDLASASE
801: AIIFGFNVKA SGSVKKAAEN KGVEIRLYRV IYELIDDVRN AMEGLLESVE EQIPIGSAEV RATFSSGSGR VAGCMVNEGK FVKDCGIKVI RKGKTVHVGV
901: LDSLKRVKEN VKEVSAGLEC GIGMDDYDDW IEGDTIEAFN AVQKRRTLEE ASASMSAAIE EAGVEL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.