CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90791	Canola	mitochondrion	87.99	87.99
CDY25276	Canola	mitochondrion	84.31	83.97
AT4G11160.2	Thale cress	plastid	79.26	78.2
CDX94227	Canola	mitochondrion, plastid	57.44	75.58
KRH48578	Soybean	cytosol, extracellular	10.91	70.18
GSMUA_Achr11P...	Banana	cytosol	52.25	65.47
VIT_14s0060g02210.t01	Wine grape	cytosol, plastid	59.75	60.41
PGSC0003DMT400031711	Potato	mitochondrion	60.03	59.78
Solyc08g081900.2.1	Tomato	mitochondrion	59.75	59.51
KRH68380	Soybean	mitochondrion	57.71	58.91
KRG96646	Soybean	mitochondrion	57.16	58.36
Os09t0515500-01	Rice	mitochondrion	56.89	58.24
KXG26389	Sorghum	mitochondrion	55.53	57.16
TraesCS1D01G333900.1	Wheat	mitochondrion	55.12	56.74
HORVU1Hr1G077340.1	Barley	mitochondrion	54.98	56.6
TraesCS1A01G331200.1	Wheat	mitochondrion	54.71	56.32
TraesCS1B01G345100.2	Wheat	mitochondrion	54.57	56.18
Zm00001d003556_P003	Maize	mitochondrion	55.66	55.51
CDY26262	Canola	cytosol	29.47	32.58
CDY48480	Canola	plastid	31.38	23.88
CDX83919	Canola	plastid	30.83	23.4
CDX96781	Canola	plastid	30.97	23.02
CDY49760	Canola	plastid	10.5	17.66
CDY13882	Canola	cytosol	6.68	16.67
CDX81960	Canola	cytosol	6.14	16.13
CDX81961	Canola	cytosol	6.0	14.92
CDY33673	Canola	cytosol	19.51	14.19
CDX96600	Canola	cytosol	18.69	13.69
CDY13881	Canola	cytosol	8.19	13.22
CDY45947	Canola	nucleus	18.55	11.86
CDY20385	Canola	nucleus	18.42	11.09

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	GO:A0A078EWZ3	EnsemblPlants:CDY05134
ProteinID:CDY05134	ProteinID:CDY05134.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00119927001	InterPro:IPR000795	InterPro:IPR036925	HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF11987	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF1	SUPFAM:SSF50447	SUPFAM:SSF52156
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3
InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EEC98C	SEG:seg

Description

BnaC03g29320D

Coordinates

chrLK031959:+:992530..996210

Molecular Weight (calculated)

79596.0 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.147

Length

733 amino acids

Sequence
(BLAST)

001: MALRHLGKKG IQASFKRGLV LLRVAASTES QISSTFLNST SESVAFSFAR YINGFGFSSL SNGESSPNLT SIRYFHASRE TLATRKDDPD RPLSHRERKK
101: QAVKTKAKFS KRDKKTDKPP AEAPYVPPPR LEKTEKRMDE KTVEVFDGMT LLEFSKRTGE SLAVLQSILV DVGETVSSEF DAISIDVAEL LAMEIGNNVK
201: REHTTEGLKI LPRPPVVTVM GHVDHGKTSL LDALRNTSVA AREAGGITQH VGAFVVGMPE SGTSITFIDT PGHAAFSEMR ARGAAVTDIV VLVVAADDGV
301: MPQTLEAIAH ARSANVPIVV AINKCDKPGA NPERVKNQLA AEGIELEDIG GNVQVVEVSA VKSTGLDKLE EALLLQAVDM DLMARVDGPA QAYVVEARLD
401: KGRGPLATVI VKAGTLESGH HVVIGCQWGK LRAIRDMVGK PTERATPAMP VEIEGLKGVP MAGDDVIVVE SEKRAKMLSE GRTRKYERDR LLKAEEDRIA
501: ELEKREAESE EGVFRVELPI IVKSDVQGTA QAVSDALRTL NSPQVFVNIV QSGVGAIFQS DLARAQTCNA CIIAFNVKCC KISSAYARVK VFHHHVIYHL
601: LEDIGNLIVE KAPGVSELEV AGEAEVLSIF KVLGKRREED GVSIAGCKVM DGRVFRSGLM RLLRSGEVLF EGSCASLKRE KQDVEQVGKG NECGLVMGDW
701: NDFRVGDVIQ CLERVVRKPK FISSESGAVR IEC

Best Arabidopsis Sequence Match ( AT4G11160.1 )
(BLAST)

001: MTSRHLGKKG IQASFRIGLV LPRVVASTER QISSTVLKRA SESVSFSFAP YINGFGFSSL SNWSRSYESF PTETSIRYFH ASRETLAKRK EDADRLLSHR
101: ERKKQTVKTK GKFSKREKKT DKPPVEAPYV PPRLKRLAKG LPGKTVDIFE GMTLLELSKR TGESVAVLQS ILINVGETFS SEFDTISVDV AELLAMEIGI
201: NVRRQHSTEG SEILPRPPVV TVMGHVDHGK TSLLDALRNT SVAAREAGGI TQHVGAFVVG MPDSGTSITF LDTPGHAAFS EMRARGAAVT DIVVLVVAAD
301: DGVMPQTLEA IAHARSANVP VVVAINKCDK PGANPEKVKY QLTSEGIELE DIGGNVQAVE VSAAKSTGLD KLEEALLLQA VDMDLKARVD GPAQAYVVEA
401: RLDKGRGPLA TIIVKAGTLV RGQHVVIGCQ WGRLRAIRDM IGKTTDRATP AMPVEIEGLK GLPMAGDDVI VVESEERARM LSEGRKRKYE KDRLLKAEEA
501: RLEEAAARLE TESEEGFVRV ELPIVVKSDV QGTAQAVADA LRTLNSPQVS VNIVHSGVGA ISHSDLDLAQ ACGACIVGFN VKGGSTGNLS AAQGSVKVFH
601: HRVIYHLLED IGNLIVEKAP GVSEMEVSGE AEVLSIFKIL GKRRTEEDGV NIAGCKVMDG RVCRSGLMRL LRSGEVVFEG SCASLKREKQ DVEQVGKGNE
701: CGLVFGDWND FRVGDVIQCM EPVIRKPKFI SSESGAVRIE C

Arabidopsis Description

At4g11160 [Source:UniProtKB/TrEMBL;Acc:Q67ZW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.