CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13882	Canola	cytosol	88.89	84.35
CDX81961	Canola	cytosol	35.84	33.9
PGSC0003DMT400029834	Potato	cytosol	7.53	32.81
PGSC0003DMT400030470	Potato	cytosol	7.53	32.81
PGSC0003DMT400033284	Potato	cytosol	13.98	27.27
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	23.3	23.55
CDY13881	Canola	cytosol	36.56	22.47
TraesCS7B01G382100.1	Wheat	cytosol	28.32	15.22
PGSC0003DMT400071616	Potato	cytosol	33.69	13.41
Solyc03g058380.2.1	Tomato	nucleus	34.05	12.48
GSMUA_Achr5P09710_001	Banana	cytosol	33.69	10.48
TraesCS7A01G479800.2	Wheat	mitochondrion, plastid	30.11	10.13
CDY33673	Canola	cytosol	33.33	9.23
CDY45947	Canola	nucleus	36.56	8.89
Solyc06g054400.2.1	Tomato	nucleus	35.84	8.76
OQU79180	Sorghum	nucleus	26.88	8.73
CDX96600	Canola	cytosol	31.18	8.69
CDY20385	Canola	nucleus	36.56	8.38
Solyc03g058350.2.1	Tomato	nucleus	34.41	8.3
Os05t0592600-01	Rice	nucleus	34.41	7.95
KXG22680	Sorghum	nucleus	34.77	7.5
Zm00001d009749_P001	Maize	nucleus	34.77	7.5
PGSC0003DMT400079119	Potato	nucleus	35.84	7.48
VIT_18s0076g00310.t01	Wine grape	nucleus	35.48	7.32
HORVU1Hr1G094740.1	Barley	nucleus	33.69	7.29
KRH35157	Soybean	nucleus	35.13	7.29
TraesCS1A01G438600.2	Wheat	nucleus	33.69	7.28
TraesCS1D01G446400.1	Wheat	golgi	33.69	7.25
KRG91641	Soybean	nucleus	35.13	7.23
TraesCS1B01G472500.1	Wheat	nucleus	33.69	7.23
CDY49760	Canola	plastid	11.11	7.11
TraesCS1D01G446900.2	Wheat	nucleus	33.33	6.62
CDY25276	Canola	mitochondrion	17.2	6.52
KRG88874	Soybean	cytosol	8.6	6.2
CDY05134	Canola	mitochondrion	16.13	6.14
CDX90791	Canola	mitochondrion	15.05	5.73
CDY26262	Canola	cytosol	12.9	5.43
GSMUA_Achr1P05220_001	Banana	nucleus	32.97	5.07
PGSC0003DMT400013995	Potato	nucleus	23.3	5.02
CDY48480	Canola	plastid	12.9	3.74
CDX83919	Canola	plastid	12.9	3.73
CDX96781	Canola	plastid	12.9	3.65
CDX94227	Canola	mitochondrion, plastid	6.45	3.23

Protein Annotations

EnsemblPlants:CDX81960	EnsemblPlantsGene:GSBRNA2T00136933001	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	InterPro:IPR036925	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	InterPro:Transl_B-barrel_sf	PANTHER:PTHR43381	PANTHER:PTHR43381:SF4	PFAM:PF11987
ProteinID:CDX81960	ProteinID:CDX81960.1	SEG:seg	SUPFAM:SSF50447	SUPFAM:SSF52156	UniParc:UPI0004EEAC52
MapMan:35.2	:	:	:	:	:

Description

BnaC08g36410D

Coordinates

chrLK031826:+:1682445..1683654

Molecular Weight (calculated)

30756.4 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.051

Length

279 amino acids

Sequence
(BLAST)

001: MDQSESAYRI RGATASYLRG KGVVLEEDIR SREYGFYTAM NDVMGCLKKK KEGKEEGVYA IASSFGYLFE LVLHLTSPEV NIPVTGLGVG PVTPADIRKV
101: TQLPQRRKHT VLAFQVQVTP KASHLAQTLG VKIICGDTIE HLCQQFQECN QELGEDKKDS ESDVAAAVSP CLLSILPKCV LNKEDPIVVG VYVVEGFVKV
201: GTPLCIPHRA FVNIGRVAWI QKDQRPVQLA REGEKVIIKI VAADPKTLQG MMLGIDFDEA DVLVSRTSRV AVYQVEINR

Best Arabidopsis Sequence Match ( AT1G76810.1 )
(BLAST)

0001: MGRKKPSARG GDAEQQPPAS SLVGATKSKK KGAQIDDDEY SIGTELSEES KVEEEKVVVI TGKKKGKKGN KKGTQQDDDD DFSDKVSAAG VKDDVPEIAF
0101: VGKKKSKGKK GGGSVSFALL DDEDEKEDNE SDGDKDDEPV ISFTGKKHAS KKGKKGGNSF AASAFDALGS DDDDTEEVHE DEEEESPITF SGKKKKSSKS
0201: SKKNTNSFTA DLLDEEEGTD ASNSRDDENT IEDEESPEVT FSGKKKSSKK KGGSVLASVG DDSVADETKT SDTKNVEVVE TGKSKKKKKN NKSGRTVQEE
0301: EDLDKLLAAL GETPAAERPA SSTPVEEKAA QPEPVAPVEN AGEKEGEEET AAAKKKKKKK EKEKEKKAAA AAAATSSVEV KEEKQEESVT EPLQPKKKDA
0401: KGKAAEKKIP KHVREMQEAL ARRQEAEERK KKEEEEKLRK EEEERRRQEE LEAQAEEAKR KRKEKEKEKL LRKKLEGKLL TAKQKTEAQK REAFKNQLLA
0501: AGGGLPVADN DGDATSSKRP IYANKKKSSR QKGIDTSVQG EDEVEPKENQ ADEQDTLGEV GLTDTGKVDL IELVNTDENS GPADVAQENG VEEDDEEDEW
0601: DAKSWGTVDL NLKGDFDDEE EEAQPVVKKE LKDAISKAHD SEPEAEKPTA KPAGTGKPLI AAVKATPEVE DATRTKRATR AKDASKKGKG LAPSESIEGE
0701: ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSS LCDLAILVVD
0801: IMHGLEPQTI ESLNLLRMRN TEFIVALNKV DRLYGWKTCK NAPIVKAMKQ QNKDVINEFN LRLKNIINEF QEQGLNTELY YKNKDMGDTF SIVPTSAISG
0901: EGVPDLLLWL VQWAQKTMVE KLTYVDEVQC TVLEVKVIEG HGTTIDVVLV NGELHEGDQI VVCGLQGPIV TTIRALLTPH PMKELRVKGT YLHYKEIKAA
1001: QGIKITAQGL EHAIAGTALH VVGPDDDIEA IKESAMEDME SVLSRIDKSG EGVYVQASTL GSLEALLEYL KSPAVKIPVS GIGIGPVHKK DVMKAGVMLE
1101: RKKEYATILA FDVKVTTEAR ELADEMGVKI FCADIIYHLF DLFKAYIENI KEEKKKESAD EAVFPCVLQI LPNCVFNKKD PIVLGVDVIE GILKIGTPIC
1201: VPGREFIDIG RIASIENNHK PVDYAKKGNK VAIKIVGSNA EEQKMFGRHF DMEDELVSHI SRRSIDILKS NYRDELSLEE WKLVVKLKNI FKIQ

Arabidopsis Description

Eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:UniProtKB/TrEMBL;Acc:F4I420]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.