Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030470 | Potato | cytosol | 2.75 | 78.12 |
| PGSC0003DMT400029834 | Potato | cytosol | 2.7 | 76.56 |
| GSMUA_Achr5P09710_001 | Banana | cytosol | 35.92 | 72.69 |
| CDY49760 | Canola | plastid | 15.32 | 63.76 |
| PGSC0003DMT400033284 | Potato | cytosol | 4.79 | 60.84 |
| AT2G27700.2 | Thale cress | cytosol | 15.98 | 60.42 |
| PGSC0003DMT400071616 | Potato | cytosol | 23.31 | 60.34 |
| Solyc03g058380.2.1 | Tomato | nucleus | 25.12 | 59.92 |
| TraesCS7B01G382100.1 | Wheat | cytosol | 15.54 | 54.34 |
| Os05t0592600-01 | Rice | nucleus | 36.03 | 54.18 |
| CDY45947 | Canola | nucleus | 33.33 | 52.75 |
| TraesCS1D01G446400.1 | Wheat | golgi | 36.75 | 51.47 |
| TraesCS1A01G438600.2 | Wheat | nucleus | 36.31 | 51.05 |
| TraesCS1B01G472500.1 | Wheat | nucleus | 36.53 | 51.0 |
| HORVU1Hr1G094740.1 | Barley | nucleus | 36.14 | 50.89 |
| KXG22680 | Sorghum | nucleus | 36.03 | 50.58 |
| CDY20385 | Canola | nucleus | 33.88 | 50.53 |
| Zm00001d009749_P001 | Maize | nucleus | 35.7 | 50.12 |
| Solyc06g054400.2.1 | Tomato | nucleus | 31.13 | 49.52 |
| CDY33673 | Canola | cytosol | 27.11 | 48.81 |
| CDX96600 | Canola | cytosol | 26.61 | 48.25 |
| Bra008279.1-P | Field mustard | nucleus | 33.55 | 48.03 |
| Bra016430.1-P | Field mustard | cytosol | 27.16 | 47.63 |
| AT1G76810.1 | Thale cress | nucleus | 33.06 | 46.37 |
| KRG91641 | Soybean | nucleus | 34.33 | 45.98 |
| TraesCS1D01G446900.2 | Wheat | nucleus | 35.48 | 45.87 |
| VIT_18s0076g00310.t01 | Wine grape | nucleus | 33.99 | 45.64 |
| PGSC0003DMT400011181 | Potato | cytosol, mitochondrion | 6.83 | 44.93 |
| AT1G21160.1 | Thale cress | cytosol | 26.83 | 44.6 |
| KRH35157 | Soybean | nucleus | 32.84 | 44.35 |
| AT1G76720.2 | Thale cress | cytosol | 29.81 | 44.2 |
| Solyc03g058350.2.1 | Tomato | nucleus | 27.71 | 43.51 |
| KRG88874 | Soybean | cytosol | 8.93 | 41.86 |
| PGSC0003DMT400079119 | Potato | nucleus | 30.8 | 41.81 |
| PGSC0003DMT400013995 | Potato | nucleus | 29.53 | 41.42 |
| OQU79180 | Sorghum | nucleus | 19.23 | 40.63 |
| TraesCS7A01G479800.2 | Wheat | mitochondrion, plastid | 17.47 | 38.24 |
| CDX81961 | Canola | cytosol | 5.62 | 34.58 |
| CDX81960 | Canola | cytosol | 5.07 | 32.97 |
| CDY13882 | Canola | cytosol | 5.18 | 31.97 |
| Bra031112.1-P | Field mustard | cytosol | 5.18 | 31.97 |
| Bra031113.1-P | Field mustard | cytosol | 6.5 | 25.99 |
| CDY13881 | Canola | cytosol | 6.45 | 25.77 |
| GSMUA_Achr11P... | Banana | cytosol | 5.62 | 17.44 |
| GSMUA_Achr8P07210_001 | Banana | plastid | 7.49 | 14.04 |
| GSMUA_Achr3P23270_001 | Banana | plastid | 7.16 | 13.37 |
Protein Annotations
| MapMan:17.4.3.2 | Gene3D:2.40.30.10 | Gene3D:3.40.50.10050 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:EFTu-like_2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr1G05220_001 | EnsemblPlants:GSMUA_Achr1P05220_001 | EnsemblPlants:GSMUA_Achr1T05220_001 | InterPro:IPR000795 | InterPro:IPR036925 |
| UniProt:M0RX80 | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF03144 | PFAM:PF11987 | PFscan:PS51722 |
| PANTHER:PTHR33977 | PANTHER:PTHR33977:SF2 | SUPFAM:SSF50447 | SUPFAM:SSF52156 | SUPFAM:SSF52540 | InterPro:TF_GTP-bd_dom |
| InterPro:TIF_IF2_dom3 | InterPro:TIF_IF2_dom3_sf | InterPro:Transl_B-barrel_sf | UniParc:UPI00029567FC | SEG:seg | : |
Description
SWIM zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G05220_001]
Coordinates
chr1:+:4312437..4331718
Molecular Weight (calculated)
205354.0 Da
IEP (calculated)
6.932
GRAVY (calculated)
-0.558
Length
1815 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEIKYSIDDL PVQDPPTEEF TASDLTWTKY GSSEHHVDDV ALVPYDRVDA FIGGECSNPE HPTRFHIERG RKRERGSLKE CKSDEYLLYR LYWCSFGPEN
0101: YGEGGSILPS RRYRLNTRNR AARPQSMRGC TCHFAIKRLY ARPSIALIIY HERRHVNKSG FICHGPLDRD AIGPGAKKVP YICSEIQQQT MSLIYLGIPE
0201: ENVLQTHIEG VQRYCDPNAS VNSLASQYVQ KLGMIIKRST HELDLDDQAS IRMWVEKNKK SVFFYQDSSE TDPFILGIQT EWQLQQMIRF CHQSILACDS
0301: SFGISKLKYP LYTLLAFDSR HHALPVAWVI TRTITKQDVS KWMKALVDRI RAVDSVWNIY GFIIDDPALE IDPIRQIFCC PILFSLWRIR RSWLKNVIKK
0401: CGHIEVQREI YKRLGKIMYS IWTKEDPMDA MEELFQDFID QTAFIQYFKA FWVPKIEMWL GTIKSLPLAS QESCGAIEGY HVKLKLKVYD DSHLGALQRV
0501: DWLVHKLTTE LHSGYWLDLY ADESGSFPSV KEEYILSTSW HRALQIPDDV VTFDDKEHLF AKVLSQKDGG QERMVWNPGS EFALCDCSWS MQGNLCKHII
0601: KVNLLCQHKK EFLPSLSYLS FQEVLLDLWR KPMDDSLSLD LSMAWVAQMQ DNIQRLVELI TSGDIAKVTN KLPLKWIGRR ERTSVGKPTG SSTLSLRRTN
0701: KGGVQKKAAA RRKSRKRKRL SRIKITRVGT DPCFCLFSRI VWVDRGAMGR KKTVAIDDDE YSFPEDLQQQ EQQPLPTQDT GSEIRTAANS RKGKKGGKNQ
0801: RDVAADDQPA EDWEKSSSAG AAEPSREDDD DAVTLVFSGK KKSSKSKKSS AGSLEDADSK KQQKKKKKKG GRIAQEEDFD QLLAELGEAP ATAQTLTPSA
0901: VLDEMDGNGD LDVELSHQGS LADPDLKKQN KKKKKKSGRT AQEEDDLDKL LAELGEAPPL ASASTSSPPT LAEEEVEGDE VKDADLESDR QVNGAEEAPE
1001: AEDRDGEAEG ESAAAKKKKK KKEKEKEKKA AAAAAAAVVE VKEEKVEVKG KVPDKKLPKH VREMQEALAR RKEAEERKKR EEEERLRKEE EERKRLEELE
1101: RLAEEAKRRK KEKEKEKLLK KKQEGKLLTA KQKDEQRRLE AMRKQFLAQS EVPIGDSGVV IKKRPKYETK KSKLTQSKVV ETEKVMENEH VVDEPRTEQA
1201: VQDVMVEEES LSQVGDSDDK TEAEQEPEES QTNSTAPAKP AVKKVADPRT SSKKNDANNK EDEHESECAT NSGPDLRSPI CCILGHVPGL LVIDTPGHES
1301: FTNLRSRGSS LCDIAILVVD IMHGLEPQTI ESINLLKSRN AEFIVALNKV DRLYGWKSCP NAPIVKALRQ QSNDVKNEFN MRLTQIITQF KEQGLNTALY
1401: YKNKEMGETF NIVPTSAISG EGIADLLLLL VQWAQKTMEE KLTYVDEVQC TVLEVKVIEG LGTTIDVVLV NGALHEGDQI VVCGMQGPIV TNIRALLTPH
1501: PMKELRVKGS YLHHKELKAA QGVKISAQGL EHAIAGTSLY VAKPEDDLED LKKTVMQDVE KVMSRIDKSG EGVYVQASTL GSLEALTEFL RSPAVSIPFC
1601: DFSIGPVHKK DVMKASVMLE RKKEFATILA FDVKVMPDAR ELADETGVRI FVADIIYHLF DQFKAYIDNL REEKKKESAE EAVFPCVLKI MPNCIFNKKD
1701: PIVLGVDVLE GILKIGTPIC IPSREFIDIG KIASIEINHK QVDVATKGQK VAIKIVASSP EEQQKMYGRH FDIDDELVSH ISRRSIDILK TNYRDDLSME
1801: EWRLVVRLKS IFKIP
0101: YGEGGSILPS RRYRLNTRNR AARPQSMRGC TCHFAIKRLY ARPSIALIIY HERRHVNKSG FICHGPLDRD AIGPGAKKVP YICSEIQQQT MSLIYLGIPE
0201: ENVLQTHIEG VQRYCDPNAS VNSLASQYVQ KLGMIIKRST HELDLDDQAS IRMWVEKNKK SVFFYQDSSE TDPFILGIQT EWQLQQMIRF CHQSILACDS
0301: SFGISKLKYP LYTLLAFDSR HHALPVAWVI TRTITKQDVS KWMKALVDRI RAVDSVWNIY GFIIDDPALE IDPIRQIFCC PILFSLWRIR RSWLKNVIKK
0401: CGHIEVQREI YKRLGKIMYS IWTKEDPMDA MEELFQDFID QTAFIQYFKA FWVPKIEMWL GTIKSLPLAS QESCGAIEGY HVKLKLKVYD DSHLGALQRV
0501: DWLVHKLTTE LHSGYWLDLY ADESGSFPSV KEEYILSTSW HRALQIPDDV VTFDDKEHLF AKVLSQKDGG QERMVWNPGS EFALCDCSWS MQGNLCKHII
0601: KVNLLCQHKK EFLPSLSYLS FQEVLLDLWR KPMDDSLSLD LSMAWVAQMQ DNIQRLVELI TSGDIAKVTN KLPLKWIGRR ERTSVGKPTG SSTLSLRRTN
0701: KGGVQKKAAA RRKSRKRKRL SRIKITRVGT DPCFCLFSRI VWVDRGAMGR KKTVAIDDDE YSFPEDLQQQ EQQPLPTQDT GSEIRTAANS RKGKKGGKNQ
0801: RDVAADDQPA EDWEKSSSAG AAEPSREDDD DAVTLVFSGK KKSSKSKKSS AGSLEDADSK KQQKKKKKKG GRIAQEEDFD QLLAELGEAP ATAQTLTPSA
0901: VLDEMDGNGD LDVELSHQGS LADPDLKKQN KKKKKKSGRT AQEEDDLDKL LAELGEAPPL ASASTSSPPT LAEEEVEGDE VKDADLESDR QVNGAEEAPE
1001: AEDRDGEAEG ESAAAKKKKK KKEKEKEKKA AAAAAAAVVE VKEEKVEVKG KVPDKKLPKH VREMQEALAR RKEAEERKKR EEEERLRKEE EERKRLEELE
1101: RLAEEAKRRK KEKEKEKLLK KKQEGKLLTA KQKDEQRRLE AMRKQFLAQS EVPIGDSGVV IKKRPKYETK KSKLTQSKVV ETEKVMENEH VVDEPRTEQA
1201: VQDVMVEEES LSQVGDSDDK TEAEQEPEES QTNSTAPAKP AVKKVADPRT SSKKNDANNK EDEHESECAT NSGPDLRSPI CCILGHVPGL LVIDTPGHES
1301: FTNLRSRGSS LCDIAILVVD IMHGLEPQTI ESINLLKSRN AEFIVALNKV DRLYGWKSCP NAPIVKALRQ QSNDVKNEFN MRLTQIITQF KEQGLNTALY
1401: YKNKEMGETF NIVPTSAISG EGIADLLLLL VQWAQKTMEE KLTYVDEVQC TVLEVKVIEG LGTTIDVVLV NGALHEGDQI VVCGMQGPIV TNIRALLTPH
1501: PMKELRVKGS YLHHKELKAA QGVKISAQGL EHAIAGTSLY VAKPEDDLED LKKTVMQDVE KVMSRIDKSG EGVYVQASTL GSLEALTEFL RSPAVSIPFC
1601: DFSIGPVHKK DVMKASVMLE RKKEFATILA FDVKVMPDAR ELADETGVRI FVADIIYHLF DQFKAYIDNL REEKKKESAE EAVFPCVLKI MPNCIFNKKD
1701: PIVLGVDVLE GILKIGTPIC IPSREFIDIG KIASIEINHK QVDVATKGQK VAIKIVASSP EEQQKMYGRH FDIDDELVSH ISRRSIDILK TNYRDDLSME
1801: EWRLVVRLKS IFKIP
001: MEIVESLEEI PVQNPQVEDF SWADLTWTKF GTSEHHDQVA LVPYARVDEF IIGECSNAEC PTRFHIERGR KRSRGSLKEY KSDEYLEYRL YWCSFGPENY
101: GEGGGVLPSR KYRLNTRNRA ARPQSMRGCT CHFVVKRLYA RPSLALLIYN ERRHVNKAGF VCHGPLDRDA IGPGAKKIPY ICNEIQQQTM SMIYLGIPEE
201: NVLEKHIEGI QRYCGSDATV DSLASQYVHK LGMIIKRSTH ELDLDDQASI KIWAERNKKS IFFYQESSET DQFMLGIQTE WQLQQLVRFG HCSLVAADST
301: FGIKRLKYPL CTLLVFDSRH HALPVAWIIS RSYLKSDVEK WMKILLQRAQ SVEPGFKING FIIDDAATET DPIRDTFCCP ILFSLWRVRR SWLRNVVKKC
401: DSIEVQRDLF KCLGELVYSI WDGVDTTKAL EKLTQDFVDQ TAFMQYFTST WLPKIGMWLS TMKSLPLASQ EACGAIEAYH IKLKVKLFDD THLGALQRVD
501: WLVHKLTTEL HSSYWLDRYA DESDSFQNVK EEYIASTSWY RAMEIPDSAV TLDENNILLA KVQSQRDSDV TRVVWNPGSE FAFCDCTWSL QGNLCKHIIK
601: VNTMCENREG YGDSMSLRSF KEKLRNIKMK PMDDSIALDL SMALTLQMFD QIKQLVRLSG TNDISNIVND LPVKWGCKKG RTTIGIPASI AAFTKKRSQK
701: RKR
101: GEGGGVLPSR KYRLNTRNRA ARPQSMRGCT CHFVVKRLYA RPSLALLIYN ERRHVNKAGF VCHGPLDRDA IGPGAKKIPY ICNEIQQQTM SMIYLGIPEE
201: NVLEKHIEGI QRYCGSDATV DSLASQYVHK LGMIIKRSTH ELDLDDQASI KIWAERNKKS IFFYQESSET DQFMLGIQTE WQLQQLVRFG HCSLVAADST
301: FGIKRLKYPL CTLLVFDSRH HALPVAWIIS RSYLKSDVEK WMKILLQRAQ SVEPGFKING FIIDDAATET DPIRDTFCCP ILFSLWRVRR SWLRNVVKKC
401: DSIEVQRDLF KCLGELVYSI WDGVDTTKAL EKLTQDFVDQ TAFMQYFTST WLPKIGMWLS TMKSLPLASQ EACGAIEAYH IKLKVKLFDD THLGALQRVD
501: WLVHKLTTEL HSSYWLDRYA DESDSFQNVK EEYIASTSWY RAMEIPDSAV TLDENNILLA KVQSQRDSDV TRVVWNPGSE FAFCDCTWSL QGNLCKHIIK
601: VNTMCENREG YGDSMSLRSF KEKLRNIKMK PMDDSIALDL SMALTLQMFD QIKQLVRLSG TNDISNIVND LPVKWGCKKG RTTIGIPASI AAFTKKRSQK
701: RKR
Arabidopsis Description
At1g60560/F8A5_10 [Source:UniProtKB/TrEMBL;Acc:Q8RY56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.