Factsheet for GSMUA_Achr3P23270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0575300-02	Rice	cytosol	45.16	78.53
GSMUA_Achr8P07210_001	Banana	plastid	77.26	77.5
CDY26262	Canola	cytosol	47.63	69.83
CDX83919	Canola	plastid	58.02	58.39
Bra016612.1-P	Field mustard	plastid	59.05	56.22
CDX96781	Canola	plastid	55.97	55.17
CDY48480	Canola	plastid	54.53	55.04
HORVU7Hr1G060530.1	Barley	plastid	54.42	54.93
KXG22198	Sorghum	plastid	54.84	54.67
KRH13635	Soybean	nucleus	57.0	54.58
TraesCS7D01G288700.1	Wheat	plastid	53.81	54.31
KRH43837	Soybean	nucleus, plastid	56.28	54.16
AT1G17220.1	Thale cress	plastid	57.1	54.09
VIT_19s0027g00130.t01	Wine grape	plastid	56.38	53.99
Bra025989.1-P	Field mustard	plastid	56.89	53.95
PGSC0003DMT400079833	Potato	plastid	55.86	53.92
Solyc07g056020.2.1	Tomato	nucleus, plastid	55.56	53.47
TraesCS7A01G287900.1	Wheat	plastid	35.8	51.33
TraesCS7B01G183700.2	Wheat	plastid	35.7	51.18
Zm00001d017588_P001	Maize	plastid	20.78	47.98
GSMUA_Achr11P...	Banana	cytosol	21.81	36.24
GSMUA_Achr5P09710_001	Banana	cytosol	14.09	15.27
GSMUA_Achr1P05220_001	Banana	nucleus	13.37	7.16

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G23270_001	EnsemblPlants:GSMUA_Achr3P23270_001	EnsemblPlants:GSMUA_Achr3T23270_001	InterPro:IF2_N	InterPro:IPR000795
InterPro:IPR036925	UniProt:M0SH43	HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF04760
PFAM:PF11987	PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5
SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like
InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf
UniParc:UPI000294DA07	SEG:seg	:	:	:	:

Description

Translation initiation factor IF-2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G23270_001]

Coordinates

chr3:-:24128606..24134757

Molecular Weight (calculated)

103517.0 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.190

Length

972 amino acids

Sequence
(BLAST)

001: MASPASLASL GSARPVSSPG VFEVSSSAVT VRRIHVVSSI RFSSFYGSMQ WRVARGRFCK CMVTTNLIEE RGIPVSSEST FKVSNSSVSR NDDADLILKP
101: PPKPVLRAPP NGQLDPSNSA SSNWSSDKAV REKPAAPMED GEEMMESLGE VLDKVEKLET ANAVKFGGKD IRDTGVSNGS SKSGRPANAT LATRNSKTTK
201: SVWRRGNPVA SVQNAVKEPA KVKEEEEKNS STTTVTNALG APPIAPLKPQ MPSPARPKLQ AKPPVAPPTI PAAKTPDVQR ERKPILIDKF SSKKPGIDPI
301: AAEAILATPL KPAKGPPPTK AKDDRRKKSS STGSLRRPSR KAARLQAAKA AEPVKVEILE VGKEGMLTEE LAYNLAVSGA DILAFLYTRG VRPNAVQTLD
401: KDIVKMICKE YDVEVIEVDP VRVEEMAKKK EVLDEEDLDM LEDRPPVITI MGHVDHGKTT LLDYIRKSRV VASEAGGITQ GIGAYKVLVP VDGKPRPCVF
501: LDTPGHEAFG AMRARGARVT DIVIIVVAAD DGVRPQTNEA IAHAKAAGVP IVIAINKAYK DGANPERAMQ ELSSVGLMPE LWGGDIPMVQ ISALKGENVD
601: ELLETVMLVA ELQELKANPK RNAKGTVIEA GLDKAKGAIA TLIVQNGTLR KGDVVVCGAA FGKVRAMFDD RGGRVDEVGP SMAVQVIGLG SVPIAGDEFE
701: VVESLDVARQ TAEACAESLQ AARISAKAGE TKVTLSSIAS AVASGKQSGL DVHRLNIILK VDVQGSIEAI RQALQVLPRD NVNLKFLLQA PGEVSTSDVD
801: LAVASEAIIF GFNVKAPGSV KSYADKKNVE IRLYRVIYDL IDDMRNAMEG LLEPVEEQVP IGTADVRATF GSGSGRVAGC MVTEGKVVKD CGVRVVRNGK
901: TVHTGTIDSL RRVKEEVKEV GAGLECGIGV NDFDDWEAGD VIEAFNTVKK RRTLEEASAT VTAALVGAGI EL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.