Factsheet for Zm00001d017588_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G287900.1	Wheat	plastid	69.83	43.36
TraesCS7B01G183700.2	Wheat	plastid	65.32	40.56
KXG22198	Sorghum	plastid	78.15	33.74
TraesCS7D01G288700.1	Wheat	plastid	70.31	30.74
HORVU7Hr1G060530.1	Barley	plastid	69.6	30.43
Os05t0575300-02	Rice	cytosol	32.3	24.33
CDY26262	Canola	cytosol	35.39	22.47
VIT_19s0027g00130.t01	Wine grape	plastid	51.78	21.48
GSMUA_Achr8P07210_001	Banana	plastid	48.22	20.95
GSMUA_Achr3P23270_001	Banana	plastid	47.98	20.78
CDX83919	Canola	plastid	46.32	20.19
AT1G17220.1	Thale cress	plastid	48.93	20.08
CDX96781	Canola	plastid	46.79	19.98
CDY48480	Canola	plastid	45.61	19.94
KRH13635	Soybean	nucleus	47.27	19.61
Bra025989.1-P	Field mustard	plastid	47.27	19.41
KRH43837	Soybean	nucleus, plastid	46.56	19.41
Solyc07g056020.2.1	Tomato	nucleus, plastid	46.56	19.41
PGSC0003DMT400079833	Potato	plastid	46.32	19.36
Bra016612.1-P	Field mustard	plastid	46.56	19.2
Zm00001d003556_P003	Maize	mitochondrion	18.53	10.61
Zm00001d009749_P001	Maize	nucleus	17.1	5.57

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6HFV5	ProteinID:AQK73512.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:P-loop_NTPase	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	SUPFAM:SSF50447	SUPFAM:SSF52540
InterPro:TIF_IF2	InterPro:Transl_B-barrel_sf	UniParc:UPI000844BA1B	EnsemblPlantsGene:Zm00001d017588	EnsemblPlants:Zm00001d017588_P001	EnsemblPlants:Zm00001d017588_T001
SEG:seg	:	:	:	:	:

Description

Translation initiation factor IF-2 chloroplastic

Coordinates

chr5:+:200778903..200790488

Molecular Weight (calculated)

45700.0 Da

IEP (calculated)

5.398

GRAVY (calculated)

-0.277

Length

421 amino acids

Sequence
(BLAST)

001: MASPASVTNL GSNGWRGPLL AAAARRAHLV TRIRFTRCMV VTNLIEEKVV QFSSRGSVSV KADDDNDLLL KPPLSMKTTS LPDQKPAGAT LDNKEKVRES
101: LDAVLEKAEK LEASSFGNAD GGNLGSRQSN VSMSNGPGPT TVEEGGNSRK TKTLKSVWRK GNPMPTVLDE DTTDVPIFGV PVHKGRRWSK AKCRAARLET
201: MQAEEPVRVE ILEVGEEGML IDDLSYELAI GESEILRFLS VRGVMLDNVQ TLHKDLVKMV CMEYDVEVLE SGPMKVEEMA KKKQFLDEED LDKLEVRPPI
301: VTIMGHVDHG KTTLLDYTRK SKLVASEAGG ITQGIGAYQV LLPVDANPQA CVFLDTPGHE GTVIEACLDK AKGPLATLVV QNGTLNKADI IVCGEAYGKI
401: RALYDDYGKL VDKAGPSDVV Q

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.