Factsheet for AT1G17220.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26262	Canola	cytosol	58.97	91.25
CDX96781	Canola	plastid	78.95	82.15
Bra016612.1-P	Field mustard	plastid	79.34	79.73
CDY48480	Canola	plastid	73.68	78.5
CDX83919	Canola	plastid	73.59	78.16
Bra025989.1-P	Field mustard	plastid	76.51	76.59
Os05t0575300-02	Rice	cytosol	39.18	71.91
VIT_19s0027g00130.t01	Wine grape	plastid	64.33	65.02
KRH43837	Soybean	nucleus, plastid	63.06	64.06
KRH13635	Soybean	nucleus	63.35	64.04
PGSC0003DMT400079833	Potato	plastid	61.4	62.56
Solyc07g056020.2.1	Tomato	nucleus, plastid	61.31	62.28
GSMUA_Achr3P23270_001	Banana	plastid	54.09	57.1
KXG22198	Sorghum	plastid	53.22	56.0
GSMUA_Achr8P07210_001	Banana	plastid	52.44	55.52
HORVU7Hr1G060530.1	Barley	plastid	52.05	55.45
TraesCS7D01G288700.1	Wheat	plastid	51.75	55.14
TraesCS7A01G287900.1	Wheat	plastid	32.46	49.12
Zm00001d017588_P001	Maize	plastid	20.08	48.93
TraesCS7B01G183700.2	Wheat	plastid	32.26	48.82
AT4G11160.2	Thale cress	plastid	22.42	30.96
AT2G27700.2	Thale cress	cytosol	9.26	19.79
AT1G21160.1	Thale cress	cytosol	14.81	13.92
AT1G76720.2	Thale cress	cytosol	14.52	12.17
AT1G76810.1	Thale cress	nucleus	15.01	11.9

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	EntrezGene:838293	ProteinID:AAD50011.1
ProteinID:AEE29560.1	EMBL:AF367343	EMBL:AK317746	ArrayExpress:AT1G17220	EnsemblPlantsGene:AT1G17220	RefSeq:AT1G17220
TAIR:AT1G17220	RefSeq:AT1G17220-TAIR-G	EnsemblPlants:AT1G17220.1	TAIR:AT1G17220.1	Unigene:At.18936	EMBL:BT001007
Symbol:FUG1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR036925	HAMAP:MF_00100_B
RefSeq:NP_173165.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00315	ScanProsite:PS01176
PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	UniProt:Q9SHI1	SUPFAM:SSF50447	SUPFAM:SSF52156
SUPFAM:SSF52540	SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI0000162DC1
SEG:seg	:	:	:	:	:

Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]

Coordinates

chr1:+:5885007..5890500

Molecular Weight (calculated)

109753.0 Da

IEP (calculated)

7.521

GRAVY (calculated)

-0.314

Length

1026 amino acids

Sequence
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.