CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43837	Soybean	nucleus, plastid	81.28	81.68
CDY26262	Canola	cytosol	50.34	77.07
Os05t0575300-02	Rice	cytosol	39.7	72.09
VIT_19s0027g00130.t01	Wine grape	plastid	66.11	66.11
CDX96781	Canola	plastid	62.96	64.81
CDX83919	Canola	plastid	61.67	64.8
CDY48480	Canola	plastid	60.69	63.97
AT1G17220.1	Thale cress	plastid	64.04	63.35
Bra016612.1-P	Field mustard	plastid	63.05	62.68
Bra025989.1-P	Field mustard	plastid	62.96	62.34
PGSC0003DMT400079833	Potato	plastid	61.77	62.26
Solyc07g056020.2.1	Tomato	nucleus, plastid	61.67	61.98
GSMUA_Achr8P07210_001	Banana	plastid	54.88	57.48
GSMUA_Achr3P23270_001	Banana	plastid	54.58	57.0
KXG22198	Sorghum	plastid	53.89	56.1
HORVU7Hr1G060530.1	Barley	plastid	52.32	55.14
TraesCS7D01G288700.1	Wheat	plastid	51.53	54.31
TraesCS7A01G287900.1	Wheat	plastid	33.1	49.56
TraesCS7B01G183700.2	Wheat	plastid	32.91	49.26
Zm00001d017588_P001	Maize	plastid	19.61	47.27
KRH48578	Soybean	cytosol, extracellular	5.22	46.49
KRG96646	Soybean	mitochondrion	22.27	31.48
KRH68380	Soybean	mitochondrion	22.07	31.2
KRG88874	Soybean	cytosol	7.98	20.93
KRG91641	Soybean	nucleus	14.98	11.22
KRH35157	Soybean	nucleus	14.78	11.16

Protein Annotations

EntrezGene:100778924	MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	EMBL:ACUP02009768
ncoils:Coil	EnsemblPlantsGene:GLYMA_15G253000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795
InterPro:IPR036925	UniProt:K7MDV8	EnsemblPlants:KRH13635	ProteinID:KRH13635	ProteinID:KRH13635.1	HAMAP:MF_00100_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722
PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI000233BB92	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:48122931..48132648

Molecular Weight (calculated)

108349.0 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.260

Length

1015 amino acids

Sequence
(BLAST)

0001: MLILVGNVQG TMSSLASPVS LGSLMGVSSS GRAHSMVRRV SLSRGNCRGR KRWHCVSLSV CRYSVTTTDF VADQGNSVSL DSNSSSSSSK GGDDGAGFVL
0101: KPPPKPVLKS PENKSDPILG PSRTIGDPGD VEEKNKVIES LGEVLEKAEK LGSSKVNGER NNGSMNKPVR SNADASPRAD KLVNSAAYQK SKTMKSVWRK
0201: GDTVASVQKV VKEVPKPNSN KNEGEKTQTR GGEEVVSQTR APQLPLKPQP PSQPQPALLS KPSIAPPPVK KPVVLRDKGV SETTSVKPKE KKSPILIDKF
0301: ASKKPVVDPL IAQAVLAPPK PGKGPPPGKF KDDFRKKGAT TGGPRRRILE DDVIHDEDAS ELNVSIPGAA TARKGRKWSK ASRRAARLQA ARDAAPVKVE
0401: ILEVGDKGML VEELAYCLAT SEGEILGYLY SKGIKPDGVQ TIDKDMVKMI CKEYDVEVID ADPFKVEGLV KKKEILDKDD LDKLKDRPPV ITIMGHVDHG
0501: KTTLLDYIRK SKVAASEAGG ITQGIGAYKV EVPVDGKNLP CVFLDTPGHE AFGAMRARGA SVTDIAIIVV AADDGIRPQT NEAIAHAKAA GVPIIIAINK
0601: IDKDGANPER VMQELSSIGL MPEDWGGDIP MVPISALKGK NIDDLLETVM LVAELQELKA NPDRSAKGTV VEAGLDKSKG PFASFIVQNG TLRRGDIVVC
0701: GEAFGKVRAL FDDGGKRVDE ATPSIPVQVI GLNNVPIAGD EFEVIESLDT ARERAETRAE SLRNERISAK AGDGKVTLSS LASAVSSGKL SGLDLHQLNI
0801: ILKVDLQGSI EAVRKALEIL PQDNVTLKFL LEATGDVSTS DVDLAVASKA IILGFNVKAP GSVKSYAENK AVEIRLYKVI YELIDDVRNA MEGLLEPVEE
0901: HVTIGSAVVR AVFSSGSGRV AGCMVTEGKI LQDCGIRVKR KGKVVHVGIL DSLRRVKEIV KEVNAGLECG LGLEDFDDWE EGDILEVFNT VQKRRTLEEA
1001: SASMAAAVEG VGVAL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.