Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079833 | Potato | plastid | 97.13 | 97.42 |
| CDY26262 | Canola | cytosol | 50.89 | 77.53 |
| Os05t0575300-02 | Rice | cytosol | 38.91 | 70.3 |
| VIT_19s0027g00130.t01 | Wine grape | plastid | 67.92 | 67.59 |
| CDY48480 | Canola | plastid | 61.98 | 65.01 |
| KRH43837 | Soybean | nucleus, plastid | 62.97 | 62.97 |
| CDX83919 | Canola | plastid | 59.8 | 62.53 |
| CDX96781 | Canola | plastid | 60.79 | 62.27 |
| Bra025989.1-P | Field mustard | plastid | 62.77 | 61.85 |
| KRH13635 | Soybean | nucleus | 61.98 | 61.67 |
| AT1G17220.1 | Thale cress | plastid | 62.28 | 61.31 |
| Bra016612.1-P | Field mustard | plastid | 60.79 | 60.14 |
| TraesCS7D01G288700.1 | Wheat | plastid | 53.37 | 55.97 |
| GSMUA_Achr8P07210_001 | Banana | plastid | 53.47 | 55.73 |
| HORVU7Hr1G060530.1 | Barley | plastid | 53.07 | 55.66 |
| GSMUA_Achr3P23270_001 | Banana | plastid | 53.47 | 55.56 |
| KXG22198 | Sorghum | plastid | 53.07 | 54.97 |
| TraesCS7A01G287900.1 | Wheat | plastid | 33.76 | 50.3 |
| TraesCS7B01G183700.2 | Wheat | plastid | 32.67 | 48.67 |
| Zm00001d017588_P001 | Maize | plastid | 19.41 | 46.56 |
| Solyc08g081900.2.1 | Tomato | mitochondrion | 23.07 | 31.66 |
| Solyc03g058380.2.1 | Tomato | nucleus | 14.06 | 18.66 |
| Solyc06g054400.2.1 | Tomato | nucleus | 16.34 | 14.46 |
| Solyc03g058350.2.1 | Tomato | nucleus | 15.94 | 13.93 |
Protein Annotations
| MapMan:17.7.3.3 | Gene3D:2.40.30.10 | Gene3D:3.40.50.10050 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR000795 | InterPro:IPR036925 | UniProt:K4CGD5 | HAMAP:MF_00100_B |
| InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF11987 | PRINTS:PR00315 | ScanProsite:PS01176 | PFscan:PS51722 |
| PANTHER:PTHR43381 | PANTHER:PTHR43381:SF5 | SUPFAM:SSF50447 | SUPFAM:SSF52156 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| EnsemblPlantsGene:Solyc07g056020.2 | EnsemblPlants:Solyc07g056020.2.1 | InterPro:TF_GTP-bd_dom | InterPro:TF_IF2_bacterial-like | InterPro:TIF_IF2 | InterPro:TIF_IF2_dom3 |
| InterPro:TIF_IF2_dom3_sf | TIGRFAMs:TIGR00231 | TIGRFAMs:TIGR00487 | InterPro:Transl_B-barrel_sf | UniParc:UPI000276AE61 | SEG:seg |
Description
No Description!
Coordinates
chr7:-:63915969..63924589
Molecular Weight (calculated)
108019.0 Da
IEP (calculated)
6.883
GRAVY (calculated)
-0.310
Length
1010 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSMASLVSL GSVCGCSSGQ FEGSFSLVRR VSFSKNFGSV NRIWGGKRWR YVSVCRYSVT TDFVADQGTS ISLESSSSSN KDDDADLMLK PAPKPQLKPG
0101: PRPGPVLGNG PVLSSNSDGE KRNPIEEERS KVIESLGEAL ETAEKLETNR KTNVSVNKAS ASARTTQRNS KTVDSDDSSN RKSKTLKSVW KKGNPIAAVQ
0201: KVVKPPPKQE PMTDGGRNSE SQSVAPIKPP QPPQKVQPQL LARPSVAPPP PIIKKPVILK DVGAAAKSPP SDGVESVGKT KELEAAGKTK ERKTILVDKF
0301: ASKKSAVDPV IAQAVLAPPK FGKSAPPGKF REEFRKKSGV SGGQRRRMVD DGIPDEEASE LDVSLPGRAR KGRKWTKASR KAARLKAAQE SAPVKVEILE
0401: VGEEGMPTEE LAYNLATSEG EILGLLYSKG IKPDGVQTLS NDMVKMVCKE YEVEVIDAAT VKVEEMAKKK EIFDEDDLDK LEDRPPVITI MGHVDHGKTT
0501: LLDHIRKTKV AASEAGGITQ GIGAYKVQVP IDTKSQICVF LDTPGHEAFG AMRARGARVT DIAIIVVAAD DGIRPQTNEA IAHAKAAGVP IVIAINKVDK
0601: DGANPDRVMQ ELSTIGLMPE DWGGDVPMVK ISALKGENID DLLEMVMLVA ELQELKANPQ RNAKGTVIEA GLDKSKGPVA TFIVQNGTLK GGDVVVCGGA
0701: YGKVRALFDD KGKRVDEAGP SMPVQVIGLN NVPFAGDEFE VVESLDIARE KAEERAESLR SERLSEKAGD GKITLSSFAS AVSGGTGLDL HQLNIILKVD
0801: LQGSIEAVRQ ALQVLPQDNV TLKFLLQATG DVSASDVDLA VASKAIIFGF NVRTPGAVKS YADNKGVEIR LYKVIYDLID DVRKAMEGLL ESVEEQVPIG
0901: SAEVRAVFSS GSGRVAGCMV TEGKVVEECG VRVTRKGKAV HVGVVESLRR VKETVKEVNA GLECGIGVED FDDFEVGDIL EAFNSVQKRR TLEEASASMA
1001: AALEEVGRGL
0101: PRPGPVLGNG PVLSSNSDGE KRNPIEEERS KVIESLGEAL ETAEKLETNR KTNVSVNKAS ASARTTQRNS KTVDSDDSSN RKSKTLKSVW KKGNPIAAVQ
0201: KVVKPPPKQE PMTDGGRNSE SQSVAPIKPP QPPQKVQPQL LARPSVAPPP PIIKKPVILK DVGAAAKSPP SDGVESVGKT KELEAAGKTK ERKTILVDKF
0301: ASKKSAVDPV IAQAVLAPPK FGKSAPPGKF REEFRKKSGV SGGQRRRMVD DGIPDEEASE LDVSLPGRAR KGRKWTKASR KAARLKAAQE SAPVKVEILE
0401: VGEEGMPTEE LAYNLATSEG EILGLLYSKG IKPDGVQTLS NDMVKMVCKE YEVEVIDAAT VKVEEMAKKK EIFDEDDLDK LEDRPPVITI MGHVDHGKTT
0501: LLDHIRKTKV AASEAGGITQ GIGAYKVQVP IDTKSQICVF LDTPGHEAFG AMRARGARVT DIAIIVVAAD DGIRPQTNEA IAHAKAAGVP IVIAINKVDK
0601: DGANPDRVMQ ELSTIGLMPE DWGGDVPMVK ISALKGENID DLLEMVMLVA ELQELKANPQ RNAKGTVIEA GLDKSKGPVA TFIVQNGTLK GGDVVVCGGA
0701: YGKVRALFDD KGKRVDEAGP SMPVQVIGLN NVPFAGDEFE VVESLDIARE KAEERAESLR SERLSEKAGD GKITLSSFAS AVSGGTGLDL HQLNIILKVD
0801: LQGSIEAVRQ ALQVLPQDNV TLKFLLQATG DVSASDVDLA VASKAIIFGF NVRTPGAVKS YADNKGVEIR LYKVIYDLID DVRKAMEGLL ESVEEQVPIG
0901: SAEVRAVFSS GSGRVAGCMV TEGKVVEECG VRVTRKGKAV HVGVVESLRR VKETVKEVNA GLECGIGVED FDDFEVGDIL EAFNSVQKRR TLEEASASMA
1001: AALEEVGRGL
0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV
Arabidopsis Description
FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.