Factsheet for GSMUA_Achr8P07210_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0575300-02	Rice	cytosol	45.3	78.53
GSMUA_Achr3P23270_001	Banana	plastid	77.5	77.26
CDY26262	Canola	cytosol	45.72	66.82
CDX83919	Canola	plastid	57.07	57.25
Bra016612.1-P	Field mustard	plastid	58.72	55.73
KXG22198	Sorghum	plastid	55.62	55.28
KRH13635	Soybean	nucleus	57.48	54.88
HORVU7Hr1G060530.1	Barley	plastid	54.28	54.62
TraesCS7D01G288700.1	Wheat	plastid	53.87	54.21
CDX96781	Canola	plastid	54.9	53.96
PGSC0003DMT400079833	Potato	plastid	56.04	53.92
CDY48480	Canola	plastid	53.46	53.79
VIT_19s0027g00130.t01	Wine grape	plastid	56.24	53.69
Solyc07g056020.2.1	Tomato	nucleus, plastid	55.73	53.47
Bra025989.1-P	Field mustard	plastid	56.24	53.17
KRH43837	Soybean	nucleus, plastid	55.42	53.17
AT1G17220.1	Thale cress	plastid	55.52	52.44
TraesCS7A01G287900.1	Wheat	plastid	35.5	50.74
TraesCS7B01G183700.2	Wheat	plastid	35.5	50.74
Zm00001d017588_P001	Maize	plastid	20.95	48.22
GSMUA_Achr11P...	Banana	cytosol	21.98	36.41
GSMUA_Achr5P09710_001	Banana	cytosol	14.34	15.5
GSMUA_Achr1P05220_001	Banana	nucleus	14.04	7.49

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G07210_001	EnsemblPlants:GSMUA_Achr8P07210_001	EnsemblPlants:GSMUA_Achr8T07210_001	InterPro:IPR000795
InterPro:IPR036925	UniProt:M0TNC4	HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987
PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	SUPFAM:SSF50447
SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI0002956EF6
SEG:seg	:	:	:	:	:

Description

Translation initiation factor IF-2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G07210_001]

Coordinates

chr8:+:4745829..4751129

Molecular Weight (calculated)

103487.0 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.152

Length

969 amino acids

Sequence
(BLAST)

001: MASPASLASL GSARSVSPGV FEVFPSVVAV RRVHVVSSIR VGGFDGWKKW RRVRGRVCKC MVTTNLVEER EIPFSAESTL KVSNSSGGRN DDADLILKPP
101: SKPVLKPLPN GQVDPSNSGS SIWSSDMVVR EKPMAAVEDT EKVIESLGEV LEKVEKLETT NALKFGGKDI KGNGAPSGGS KPVGPENATS SPRKSKTLKS
201: VWRKGNPVAS VQRVVKELPK VREDRKKDIP IITETKISGA AQVAPLRPQM PLPARPKLQA KPAAVPPSTP AVKKSDVQKE RKPILIDKFA SKKPVDDPIA
301: AEAILATPLK PAKGPPPSKV KDERRKKSSS TGGLRRRMTN DGEISEQEAS ELDVPIPEGM LTEELAYNLA VGEADILAFL FSKGVKPETV HALDKDMVKM
401: ICKEYDVEVI EVDPVRVEEM AKKKEVLDED DLDMLEDRPP VITIMGHVDH GKTTLLDYIR KSRVVASEAG GITQGIGAYK VLVPVDGKPQ PCVFLDTPGH
501: EAFGAMRARG ARVTDIVIIV VAADDGVRPQ TSEAIAHAKA AGVPIIIAIN KACQLNKDGA NPERVLQELS SVGLMPEIWG GDIPMVQISA LKGENVDELL
601: ETVMLVAELQ ELKANPQRNA KGTVIEAGLD KAKGAVATLI VQNGTLKKSD VVVCGEAFGK VRAMFDDRGG HVDKAGPSMA VQVIGLSSVP IAGDEFEVVK
701: SLDVARERAE TCAESLWVAR ISAKAGEVKV TLSSIASAVA TGKQSGLDVH QLNIILKVDV QGSIGAIRQA LQVLPQSNVS LKFLLQAPGE VSTSDVDLAV
801: ASEAIIFGFN VKTPGSVKSY ADKKNVEIRL YRVIYDLVDD MRNAMEGLLE PVEEQVPIGT ADVRATFSSG SGRVAGCMIT EGKVVKDCGV RVVRNGKTVH
901: TGTIDSLRRV KEDVKEVGAG LECGIGVDDF DDWEAGDVIE AFNTVEKQRT LEEASATVAA ALVGAGIEL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.