CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13635	Soybean	nucleus	81.68	81.28
CDY26262	Canola	cytosol	50.79	77.38
Os05t0575300-02	Rice	cytosol	38.91	70.3
VIT_19s0027g00130.t01	Wine grape	plastid	66.73	66.4
CDX96781	Canola	plastid	63.47	65.01
CDY48480	Canola	plastid	61.88	64.9
PGSC0003DMT400079833	Potato	plastid	62.97	63.16
AT1G17220.1	Thale cress	plastid	64.06	63.06
Solyc07g056020.2.1	Tomato	nucleus, plastid	62.97	62.97
CDX83919	Canola	plastid	59.7	62.42
Bra025989.1-P	Field mustard	plastid	63.17	62.24
Bra016612.1-P	Field mustard	plastid	60.3	59.65
GSMUA_Achr3P23270_001	Banana	plastid	54.16	56.28
KXG22198	Sorghum	plastid	54.16	56.1
TraesCS7D01G288700.1	Wheat	plastid	52.87	55.45
GSMUA_Achr8P07210_001	Banana	plastid	53.17	55.42
HORVU7Hr1G060530.1	Barley	plastid	51.98	54.52
TraesCS7A01G287900.1	Wheat	plastid	32.67	48.67
TraesCS7B01G183700.2	Wheat	plastid	31.58	47.05
Zm00001d017588_P001	Maize	plastid	19.41	46.56
KRH48578	Soybean	cytosol, extracellular	5.25	46.49
KRG96646	Soybean	mitochondrion	22.28	31.34
KRH68380	Soybean	mitochondrion	22.18	31.2
KRG88874	Soybean	cytosol	7.92	20.67
KRG91641	Soybean	nucleus	15.05	11.22
KRH35157	Soybean	nucleus	14.75	11.09

Protein Annotations

EntrezGene:100818840	MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	EMBL:ACUP02004898
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G174200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	UniProt:I1KU76
InterPro:IPR000795	InterPro:IPR036925	EnsemblPlants:KRH43837	ProteinID:KRH43837	ProteinID:KRH43837.1	HAMAP:MF_00100_B
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722
PANTHER:PTHR43381	PANTHER:PTHR43381:SF5	SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI0002338578	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:13906471..13915166

Molecular Weight (calculated)

107913.0 Da

IEP (calculated)

8.843

GRAVY (calculated)

-0.286

Length

1010 amino acids

Sequence
(BLAST)

0001: MLILVGNVQG TMTSFASPVS LGNLMGVSSS GRSHSVVRRV SLSRGNCRGR KRWHCVSLSV CRYSVTTTDF VADQGNSVSL DSNSSRSKGG DDGAGFVLKP
0101: PPKPVLKSPE NKSDPILGPS RTTGDVEERN KVIESLGEVL EKAEKLGSSK VNGDRNNGSV NKPVRSNANA SPKADKPVNS AAPQKSKTLK SVWRKGDTVA
0201: SVQKVVKEVP KPINDKNEGE RTQTRGGEKV VSQTHAPQPS LKPQPPSQPQ PMLLSKPSIA PPPAKKPVVL KDRGAAETTS VKSKEKKSPI LIDKFASKKP
0301: VVDPLIAQAV LAPPKPGKAP PPGKFKDDFR KKGAMAGGPR RRILEDDAIH DEDASELNVS IPGAATARKG RKWSKASRRA ARLQAARDAA PIKVEILEVG
0401: DKGMLVEELA YCLATSEGEI LGYLYSKGIK PDGVQTIDKD MVKMICKEYD VEVIDADPFK VEGLVKKREI LDEDDFDKLK DRPPVITIMG HVDHGKTTLL
0501: DYIRKSKVAA SEAGGITQGI GAYKVEVPVD GKKLPCVFLD TPGHEAFGAM RARGASVTDM AIIVVAADDG IRPQTNEAIA HAKAAGVPII IAINKIDKDG
0601: ANPERVMQEL SSIGLMPEDW GGDIPMVPIS ALKGKNIDDL LETVMLVAEL QELKANPDRS AKGTVVEAGL DKSKGPFASF IVQNGTLRRG DIVVCGEASG
0701: KVRALFDDGG KRVDEASPSM PVQVIGLNNV PIAGDEFEVV ESLDTARERA EARAESLRNE RISAKAGDGK VTLSSLASAV SSGKLSGLDL HQLNIILKVD
0801: LQGSIEAVRK ALEILPQDNV TLKFLLEATG DVNTSDVDLS VASKAIILGF NVKAPGSVKS YGENKAVEIR LYRVIYELID DVRKAMEGLL EPVEEQVTIG
0901: SAVVRAVFSS GSGRVAGCMV TEGKILNDCG IRVKRKGKVV HVGILDSLRR VKEIVKEVNA GLECGLGLED FDDWEEGDIL EAFNTFQKKR TLEEASASMA
1001: SAVEGVGVAL

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.