Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
nucleus: 27291164 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030470 | Potato | cytosol | 3.99 | 84.38 |
| PGSC0003DMT400029834 | Potato | cytosol | 3.91 | 82.81 |
| Solyc03g058380.2.1 | Tomato | nucleus | 41.55 | 73.98 |
| PGSC0003DMT400071616 | Potato | cytosol | 37.49 | 72.47 |
| AT2G27700.2 | Thale cress | cytosol | 25.17 | 71.04 |
| GSMUA_Achr5P09710_001 | Banana | cytosol | 46.94 | 70.9 |
| PGSC0003DMT400033284 | Potato | cytosol | 7.16 | 67.83 |
| CDY49760 | Canola | plastid | 21.55 | 66.97 |
| KRH35157 | Soybean | nucleus | 65.24 | 65.77 |
| CDY45947 | Canola | nucleus | 51.81 | 61.2 |
| AT1G76810.1 | Thale cress | nucleus | 56.75 | 59.43 |
| CDY20385 | Canola | nucleus | 52.32 | 58.26 |
| Bra008279.1-P | Field mustard | nucleus | 54.24 | 57.97 |
| Solyc06g054400.2.1 | Tomato | nucleus | 48.78 | 57.93 |
| VIT_18s0076g00310.t01 | Wine grape | nucleus | 57.71 | 57.84 |
| CDY33673 | Canola | cytosol | 42.58 | 57.24 |
| CDX96600 | Canola | cytosol | 42.21 | 57.14 |
| Bra016430.1-P | Field mustard | cytosol | 42.8 | 56.04 |
| Os05t0592600-01 | Rice | nucleus | 48.78 | 54.76 |
| PGSC0003DMT400079119 | Potato | nucleus | 53.65 | 54.38 |
| AT1G76720.2 | Thale cress | cytosol | 48.34 | 53.51 |
| KXG22680 | Sorghum | nucleus | 49.89 | 52.28 |
| TraesCS7B01G382100.1 | Wheat | cytosol | 20.0 | 52.22 |
| TraesCS1A01G438600.2 | Wheat | nucleus | 49.74 | 52.21 |
| KRG88874 | Soybean | cytosol | 14.91 | 52.2 |
| Solyc03g058350.2.1 | Tomato | nucleus | 44.35 | 51.99 |
| Zm00001d009749_P001 | Maize | nucleus | 49.23 | 51.59 |
| PGSC0003DMT400013995 | Potato | nucleus | 49.23 | 51.55 |
| TraesCS1D01G446400.1 | Wheat | golgi | 49.23 | 51.47 |
| HORVU1Hr1G094740.1 | Barley | nucleus | 48.93 | 51.44 |
| AT1G21160.1 | Thale cress | cytosol | 41.25 | 51.19 |
| TraesCS1B01G472500.1 | Wheat | nucleus | 49.08 | 51.15 |
| TraesCS1D01G446900.2 | Wheat | nucleus | 48.93 | 47.22 |
| PGSC0003DMT400011181 | Potato | cytosol, mitochondrion | 9.59 | 47.1 |
| OQU79180 | Sorghum | nucleus | 28.56 | 45.05 |
| TraesCS7A01G479800.2 | Wheat | mitochondrion, plastid | 26.2 | 42.82 |
| CDX81961 | Canola | cytosol | 8.04 | 36.95 |
| CDX81960 | Canola | cytosol | 7.23 | 35.13 |
| GSMUA_Achr1P05220_001 | Banana | nucleus | 45.98 | 34.33 |
| CDY13882 | Canola | cytosol | 7.16 | 32.99 |
| Bra031112.1-P | Field mustard | cytosol | 7.16 | 32.99 |
| CDY13881 | Canola | cytosol | 9.45 | 28.19 |
| Bra031113.1-P | Field mustard | cytosol | 9.37 | 27.97 |
| KRH48578 | Soybean | cytosol, extracellular | 1.85 | 21.93 |
| KRH68380 | Soybean | mitochondrion | 9.37 | 17.69 |
| KRG96646 | Soybean | mitochondrion | 9.3 | 17.55 |
| KRH43837 | Soybean | nucleus, plastid | 11.22 | 15.05 |
| KRH13635 | Soybean | nucleus | 11.22 | 14.98 |
Protein Annotations
| EntrezGene:100814875 | MapMan:17.4.3.2 | Gene3D:2.40.30.10 | Gene3D:3.40.50.10050 | Gene3D:3.40.50.300 | EMBL:ACUP02012695 |
| ncoils:Coil | InterPro:EFTu-like_2 | EnsemblPlantsGene:GLYMA_20G166200 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:I1NH15 | InterPro:IPR000795 |
| InterPro:IPR036925 | EnsemblPlants:KRG91641 | ProteinID:KRG91641 | ProteinID:KRG91641.1 | InterPro:P-loop_NTPase | PFAM:PF00009 |
| PFAM:PF03144 | PFAM:PF11987 | PRINTS:PR00315 | PFscan:PS51722 | PANTHER:PTHR43381 | PANTHER:PTHR43381:SF4 |
| SUPFAM:SSF50447 | SUPFAM:SSF52156 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:TF_GTP-bd_dom | InterPro:TIF_IF2 |
| InterPro:TIF_IF2_dom3 | InterPro:TIF_IF2_dom3_sf | TIGRFAMs:TIGR00231 | InterPro:Transl_B-barrel_sf | UniParc:UPI000233D8FC | SEG:seg |
Description
hypothetical protein
Coordinates
chr20:-:40383661..40393718
Molecular Weight (calculated)
148027.0 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.742
Length
1355 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGKKKPTARD EENAVQQGGG GKSKKKAVLI DDDEYSIGTE LSEEPAPASE EKPVVAGKKK GKKGNAKAKS NDDDVDEDED DPEIVFAGKK KGKNKKGGGS
0101: SAFTASGFDL LGDERDDDEE KSGLTGEVDG EEEDEPVVSF TGKKKASKKE GGSLFSASAF DAIDDGEEED GPVISFKGKK KSSKGSKKGG GSLFSASAFD
0201: AIDDDADGEV VDDKNDDVDD DEPVIAFTGK KKSSKGGKKG GSVFSAAVLG EIDDGEENKD DGGGDDDDDD IGPITFSGKK KKSSQKAANS VSKGASVEEG
0301: DDKDEDDVSL VAFSGKKKSS KKKGSSTAAK GSDENMDAVD PEAPSVGSTD AGNSNVNKSE EVAGNSKNKK KNKKKSGRTA QEEEDLDKLL AELGETPPVP
0401: KPSTPPQDDK VQPTPEVVLV ADASGEKEGE EETVDTAAAK KKKKKKEKEK EKKAAAAAAA AAAAVAGTVP ENETAEDKAE VIEPKKNDSK AKKAADKKVP
0501: KHVREMQEAL ARRQEAEERK KREEEERLRK EEEERRRQEE LERQAEEARR RKKEREKEKL QKKKQEGKLL TGKQKEEARR LEAMRKQILN NTGGMTLPGG
0601: DSGAPAKKPI YQTKKVKPNN RNQNGAAAAQ IAESVEAKET ATDVASEEPE KIEEVESVQV DDKVELPVAV EEDGEEDDDE DEWDAKSWDD VNLNTKGAFA
0701: DEEADSEPKP IVKKEIKNAV PAQNAGATKP VAEEIENGKQ INPHLNREPR KSVVPPKPSD ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ
0801: QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSG LCDIAILVVD IMHGLEQQTI ESLNLLKMRN TEFIVALNKV DRLYGWKTCR
0901: NAPIVKALKQ QTKDVQNEFN MRLTQIITEF KVQGLNTELY YKNKEMGETF SIVPTSAISG EGIPDLLLLL IQWTQKTMVE KLTYSEEVQC TVLEVKVVEG
1001: HGTTIDVVLV NGVLHEGEQI VVCGMQGPIV TTIRALLTPH PMKELRVKGT YLHHKEIKAA MGIKITAQGL EHAIAGTGLY VVKPDDDLED VKESAMEDMR
1101: SVMSRIDRTG EGVCVQASTL GSLEALLEFL KTPEVSIPVS GISIGPVHKK DVMKASVMLE KKREYAAILA FDVKVTPEAR ELADELGVKI FIADIIYHLF
1201: DQFKAYIDNI KEEKKREAAD EAVFPCVMSI LPNCIFNKKD PIVLGVDILE GILKIGTPIC IPSREFIDIG RIASIENNHK PVDYAKKGQK VAIKIVGSNS
1301: EEQQKMFGRH FEIDDELVSH ISRRSIDILK ANYRDELNME EWRLVVKLKN LFKIQ
0101: SAFTASGFDL LGDERDDDEE KSGLTGEVDG EEEDEPVVSF TGKKKASKKE GGSLFSASAF DAIDDGEEED GPVISFKGKK KSSKGSKKGG GSLFSASAFD
0201: AIDDDADGEV VDDKNDDVDD DEPVIAFTGK KKSSKGGKKG GSVFSAAVLG EIDDGEENKD DGGGDDDDDD IGPITFSGKK KKSSQKAANS VSKGASVEEG
0301: DDKDEDDVSL VAFSGKKKSS KKKGSSTAAK GSDENMDAVD PEAPSVGSTD AGNSNVNKSE EVAGNSKNKK KNKKKSGRTA QEEEDLDKLL AELGETPPVP
0401: KPSTPPQDDK VQPTPEVVLV ADASGEKEGE EETVDTAAAK KKKKKKEKEK EKKAAAAAAA AAAAVAGTVP ENETAEDKAE VIEPKKNDSK AKKAADKKVP
0501: KHVREMQEAL ARRQEAEERK KREEEERLRK EEEERRRQEE LERQAEEARR RKKEREKEKL QKKKQEGKLL TGKQKEEARR LEAMRKQILN NTGGMTLPGG
0601: DSGAPAKKPI YQTKKVKPNN RNQNGAAAAQ IAESVEAKET ATDVASEEPE KIEEVESVQV DDKVELPVAV EEDGEEDDDE DEWDAKSWDD VNLNTKGAFA
0701: DEEADSEPKP IVKKEIKNAV PAQNAGATKP VAEEIENGKQ INPHLNREPR KSVVPPKPSD ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ
0801: QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSG LCDIAILVVD IMHGLEQQTI ESLNLLKMRN TEFIVALNKV DRLYGWKTCR
0901: NAPIVKALKQ QTKDVQNEFN MRLTQIITEF KVQGLNTELY YKNKEMGETF SIVPTSAISG EGIPDLLLLL IQWTQKTMVE KLTYSEEVQC TVLEVKVVEG
1001: HGTTIDVVLV NGVLHEGEQI VVCGMQGPIV TTIRALLTPH PMKELRVKGT YLHHKEIKAA MGIKITAQGL EHAIAGTGLY VVKPDDDLED VKESAMEDMR
1101: SVMSRIDRTG EGVCVQASTL GSLEALLEFL KTPEVSIPVS GISIGPVHKK DVMKASVMLE KKREYAAILA FDVKVTPEAR ELADELGVKI FIADIIYHLF
1201: DQFKAYIDNI KEEKKREAAD EAVFPCVMSI LPNCIFNKKD PIVLGVDILE GILKIGTPIC IPSREFIDIG RIASIENNHK PVDYAKKGQK VAIKIVGSNS
1301: EEQQKMFGRH FEIDDELVSH ISRRSIDILK ANYRDELNME EWRLVVKLKN LFKIQ
0001: MGRKKPSARG GDAEQQPPAS SLVGATKSKK KGAQIDDDEY SIGTELSEES KVEEEKVVVI TGKKKGKKGN KKGTQQDDDD DFSDKVSAAG VKDDVPEIAF
0101: VGKKKSKGKK GGGSVSFALL DDEDEKEDNE SDGDKDDEPV ISFTGKKHAS KKGKKGGNSF AASAFDALGS DDDDTEEVHE DEEEESPITF SGKKKKSSKS
0201: SKKNTNSFTA DLLDEEEGTD ASNSRDDENT IEDEESPEVT FSGKKKSSKK KGGSVLASVG DDSVADETKT SDTKNVEVVE TGKSKKKKKN NKSGRTVQEE
0301: EDLDKLLAAL GETPAAERPA SSTPVEEKAA QPEPVAPVEN AGEKEGEEET AAAKKKKKKK EKEKEKKAAA AAAATSSVEV KEEKQEESVT EPLQPKKKDA
0401: KGKAAEKKIP KHVREMQEAL ARRQEAEERK KKEEEEKLRK EEEERRRQEE LEAQAEEAKR KRKEKEKEKL LRKKLEGKLL TAKQKTEAQK REAFKNQLLA
0501: AGGGLPVADN DGDATSSKRP IYANKKKSSR QKGIDTSVQG EDEVEPKENQ ADEQDTLGEV GLTDTGKVDL IELVNTDENS GPADVAQENG VEEDDEEDEW
0601: DAKSWGTVDL NLKGDFDDEE EEAQPVVKKE LKDAISKAHD SEPEAEKPTA KPAGTGKPLI AAVKATPEVE DATRTKRATR AKDASKKGKG LAPSESIEGE
0701: ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSS LCDLAILVVD
0801: IMHGLEPQTI ESLNLLRMRN TEFIVALNKV DRLYGWKTCK NAPIVKAMKQ QNKDVINEFN LRLKNIINEF QEQGLNTELY YKNKDMGDTF SIVPTSAISG
0901: EGVPDLLLWL VQWAQKTMVE KLTYVDEVQC TVLEVKVIEG HGTTIDVVLV NGELHEGDQI VVCGLQGPIV TTIRALLTPH PMKELRVKGT YLHYKEIKAA
1001: QGIKITAQGL EHAIAGTALH VVGPDDDIEA IKESAMEDME SVLSRIDKSG EGVYVQASTL GSLEALLEYL KSPAVKIPVS GIGIGPVHKK DVMKAGVMLE
1101: RKKEYATILA FDVKVTTEAR ELADEMGVKI FCADIIYHLF DLFKAYIENI KEEKKKESAD EAVFPCVLQI LPNCVFNKKD PIVLGVDVIE GILKIGTPIC
1201: VPGREFIDIG RIASIENNHK PVDYAKKGNK VAIKIVGSNA EEQKMFGRHF DMEDELVSHI SRRSIDILKS NYRDELSLEE WKLVVKLKNI FKIQ
0101: VGKKKSKGKK GGGSVSFALL DDEDEKEDNE SDGDKDDEPV ISFTGKKHAS KKGKKGGNSF AASAFDALGS DDDDTEEVHE DEEEESPITF SGKKKKSSKS
0201: SKKNTNSFTA DLLDEEEGTD ASNSRDDENT IEDEESPEVT FSGKKKSSKK KGGSVLASVG DDSVADETKT SDTKNVEVVE TGKSKKKKKN NKSGRTVQEE
0301: EDLDKLLAAL GETPAAERPA SSTPVEEKAA QPEPVAPVEN AGEKEGEEET AAAKKKKKKK EKEKEKKAAA AAAATSSVEV KEEKQEESVT EPLQPKKKDA
0401: KGKAAEKKIP KHVREMQEAL ARRQEAEERK KKEEEEKLRK EEEERRRQEE LEAQAEEAKR KRKEKEKEKL LRKKLEGKLL TAKQKTEAQK REAFKNQLLA
0501: AGGGLPVADN DGDATSSKRP IYANKKKSSR QKGIDTSVQG EDEVEPKENQ ADEQDTLGEV GLTDTGKVDL IELVNTDENS GPADVAQENG VEEDDEEDEW
0601: DAKSWGTVDL NLKGDFDDEE EEAQPVVKKE LKDAISKAHD SEPEAEKPTA KPAGTGKPLI AAVKATPEVE DATRTKRATR AKDASKKGKG LAPSESIEGE
0701: ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSS LCDLAILVVD
0801: IMHGLEPQTI ESLNLLRMRN TEFIVALNKV DRLYGWKTCK NAPIVKAMKQ QNKDVINEFN LRLKNIINEF QEQGLNTELY YKNKDMGDTF SIVPTSAISG
0901: EGVPDLLLWL VQWAQKTMVE KLTYVDEVQC TVLEVKVIEG HGTTIDVVLV NGELHEGDQI VVCGLQGPIV TTIRALLTPH PMKELRVKGT YLHYKEIKAA
1001: QGIKITAQGL EHAIAGTALH VVGPDDDIEA IKESAMEDME SVLSRIDKSG EGVYVQASTL GSLEALLEYL KSPAVKIPVS GIGIGPVHKK DVMKAGVMLE
1101: RKKEYATILA FDVKVTTEAR ELADEMGVKI FCADIIYHLF DLFKAYIENI KEEKKKESAD EAVFPCVLQI LPNCVFNKKD PIVLGVDVIE GILKIGTPIC
1201: VPGREFIDIG RIASIENNHK PVDYAKKGNK VAIKIVGSNA EEQKMFGRHF DMEDELVSHI SRRSIDILKS NYRDELSLEE WKLVVKLKNI FKIQ
Arabidopsis Description
Eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:UniProtKB/TrEMBL;Acc:F4I420]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.