Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d009749_P001 Maize nucleus 84.76 84.76
PGSC0003DMT400030470 Potato cytosol 3.87 78.12
PGSC0003DMT400029834 Potato cytosol 3.79 76.56
Os05t0592600-01 Rice nucleus 70.77 75.81
TraesCS1A01G438600.2 Wheat nucleus 73.63 73.74
TraesCS1D01G446400.1 Wheat golgi 73.86 73.69
GSMUA_Achr5P09710_001 Banana cytosol 50.5 72.8
TraesCS1B01G472500.1 Wheat nucleus 72.78 72.38
HORVU1Hr1G094740.1 Barley nucleus 71.0 71.22
Solyc03g058380.2.1 Tomato nucleus 39.6 67.28
PGSC0003DMT400071616 Potato cytosol 36.19 66.76
AT2G27700.2 Thale cress cytosol 24.52 66.04
CDY49760 Canola plastid 21.35 63.3
TraesCS1D01G446900.2 Wheat nucleus 66.28 61.04
PGSC0003DMT400033284 Potato cytosol 6.65 60.14
CDY45947 Canola nucleus 50.73 57.19
Solyc06g054400.2.1 Tomato nucleus 49.19 55.74
Bra008279.1-P Field mustard nucleus 52.44 53.47
CDY20385 Canola nucleus 50.27 53.41
CDY33673 Canola cytosol 41.61 53.37
CDX96600 Canola cytosol 41.07 53.05
Bra016430.1-P Field mustard cytosol 41.45 51.79
AT1G76810.1 Thale cress nucleus 51.12 51.08
Solyc03g058350.2.1 Tomato nucleus 45.63 51.04
KRG91641 Soybean nucleus 52.28 49.89
VIT_18s0076g00310.t01 Wine grape nucleus 51.89 49.63
KRH35157 Soybean nucleus 50.66 48.74
PGSC0003DMT400079119 Potato nucleus 50.27 48.62
KRG88874 Soybean cytosol 14.46 48.32
AT1G76720.2 Thale cress cytosol 45.71 48.28
PGSC0003DMT400013995 Potato nucleus 47.95 47.91
AT1G21160.1 Thale cress cytosol 40.22 47.62
OQU79180 Sorghum nucleus 30.24 45.52
PGSC0003DMT400011181 Potato cytosol, mitochondrion 9.44 44.2
CDX81961 Canola cytosol 8.58 37.63
GSMUA_Achr1P05220_001 Banana nucleus 50.58 36.03
CDX81960 Canola cytosol 7.5 34.77
CDY13882 Canola cytosol 7.66 33.67
Bra031112.1-P Field mustard cytosol 7.66 33.67
Bra031113.1-P Field mustard cytosol 9.9 28.19
CDY13881 Canola cytosol 9.82 27.97
KXG26389 Sorghum mitochondrion 9.44 17.13
KXG22198 Sorghum plastid 11.6 15.38
Protein Annotations
MapMan:17.4.3.2Gene3D:2.40.30.10Gene3D:3.40.50.10050Gene3D:3.40.50.300UniProt:A0A1B6PAE0ncoils:Coil
InterPro:EFTu-like_2GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0016787InterPro:IPR000795InterPro:IPR036925EnsemblPlants:KXG22680ProteinID:KXG22680
ProteinID:KXG22680.1InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF03144PFAM:PF11987PRINTS:PR00315
PFscan:PS51722PANTHER:PTHR43381PANTHER:PTHR43381:SF4EnsemblPlantsGene:SORBI_3009G255800SUPFAM:SSF50447SUPFAM:SSF52156
SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:TF_GTP-bd_domInterPro:TIF_IF2InterPro:TIF_IF2_dom3InterPro:TIF_IF2_dom3_sf
TIGRFAMs:TIGR00231InterPro:Transl_B-barrel_sfUniParc:UPI00081AD421SEG:seg::
Description
hypothetical protein
Coordinates
chr9:-:58957657..58964325
Molecular Weight (calculated)
143660.0 Da
IEP (calculated)
4.928
GRAVY (calculated)
-0.872
Length
1293 amino acids
Sequence
(BLAST)
0001: MGRKKNVAID DDEYSFPQDD AADPAPPAAA DKEKPKKGGK KGKKGGKAAA PDDDDYEPPP PPPPAAGEDD DDEPVNLVFT GKKKKKKGAA PAASFSAFSA
0101: LGEEDEDQDE VDPVPAAAAK PEPSNDPAED DDEPDYDFSK SKKKKKKKDK GPRSAPAKDE DDEPAPPPPP VAEEEDEEPS VTAAAAAKKQ QKKKKKKGAF
0201: MMDGENVDEI LAGMEEDPQL VDEPEREEVK AQDPVAAPDA DDAAGKKSKK KKKKGGFTMD VDGEDIDQIL AGIEGRPPPA EEPEPEDTND DGTVAAAAPV
0301: EDAEGKKSKK KKKKSGRTAK EEEELEKVLA ELDLVPPAAE GKPAQVPQSA ALAKEDVGAA EDGNVEDKAE EGGEVESAAA KKKKKKKEKE KEKKAAAKGA
0401: EAKKEEEKEK EAPKGKVDMK KLPKHVREMQ EALARRKEAE ERQKREEEER LRKEEEERLR REEEERKAEE AKRRKKEREK EKLLKKKQEG KLLTGKQKEE
0501: AKRLEAMRRQ FLEQSELQKA EGAAPETKKR PIYDSKKKKA QPKTTEIAKV VEEQQEELNE VNNDEEEYVL VDQESQSQVE ESEEKTEPDQ ETEEPKPEEE
0601: EEEDEDEWDA KSWDDIDVNL PKTNAFDEEE AKPVVKKTEP VQKQENTKAQ PVMPAVKKLV PPVADSKKSE TDGGGANNGN IKRNKKKGPV KEDNSKNGSD
0701: LRSPICCILG HVDTGKTKLL DCIRRTNVQE GEAGGITQQI GATYFPTENI RERTRELKAD ATLKVPGLLV IDTPGHESFS NLRSRGSSLC DIAILVVDIM
0801: HGLEPQTIES LNLLKSRDAV FIVALNKVDR LYGWKKCPNA PIVKALKQQN EDVKREFNMR LTDIVTQFKM QGVNTALYYK NKEMEDTFNI VPTSAVSGEG
0901: IPDLLLLLVQ WAQKTMEEKL TFVDEVQCTV LEVKVVEGHG TTIDVVLVNG ILHEGDQIVV CGMQGPIVTT VRALLTPHPM RELRVKGTYL HHKEIRAAQG
1001: VKISAQGLEH AIAGTALYVL GPDDDLDKLK EAVMEEMTRV RSRIDRSGEG VYVQASTLGS LEALTEFLKS PAVNIPFCDF SIGPVHKKDV MKASVMLERK
1101: KEYATILAFD VKVMPDAREL AEESGVRIFV ADIIYHLFDQ FTAYIKNLKE EKKKESAEEA VFPCVLKIMP NCVFNKKDPI VLGVDVLEGI AKVGTPLCIP
1201: TKEYIDIGKI ASIEINHKQV DMATKGQKVA IKIIANNSDE QQRSFGRHFD MEDELVSRIS RRSIDILKQN YREDLSIEDW KLVVKLKAIL KIQ
Best Arabidopsis Sequence Match ( AT1G76810.1 )
(BLAST)
0001: MGRKKPSARG GDAEQQPPAS SLVGATKSKK KGAQIDDDEY SIGTELSEES KVEEEKVVVI TGKKKGKKGN KKGTQQDDDD DFSDKVSAAG VKDDVPEIAF
0101: VGKKKSKGKK GGGSVSFALL DDEDEKEDNE SDGDKDDEPV ISFTGKKHAS KKGKKGGNSF AASAFDALGS DDDDTEEVHE DEEEESPITF SGKKKKSSKS
0201: SKKNTNSFTA DLLDEEEGTD ASNSRDDENT IEDEESPEVT FSGKKKSSKK KGGSVLASVG DDSVADETKT SDTKNVEVVE TGKSKKKKKN NKSGRTVQEE
0301: EDLDKLLAAL GETPAAERPA SSTPVEEKAA QPEPVAPVEN AGEKEGEEET AAAKKKKKKK EKEKEKKAAA AAAATSSVEV KEEKQEESVT EPLQPKKKDA
0401: KGKAAEKKIP KHVREMQEAL ARRQEAEERK KKEEEEKLRK EEEERRRQEE LEAQAEEAKR KRKEKEKEKL LRKKLEGKLL TAKQKTEAQK REAFKNQLLA
0501: AGGGLPVADN DGDATSSKRP IYANKKKSSR QKGIDTSVQG EDEVEPKENQ ADEQDTLGEV GLTDTGKVDL IELVNTDENS GPADVAQENG VEEDDEEDEW
0601: DAKSWGTVDL NLKGDFDDEE EEAQPVVKKE LKDAISKAHD SEPEAEKPTA KPAGTGKPLI AAVKATPEVE DATRTKRATR AKDASKKGKG LAPSESIEGE
0701: ENLRSPICCI MGHVDTGKTK LLDCIRGTNV QEGEAGGITQ QIGATYFPAE NIRERTKELK ADAKLKVPGL LVIDTPGHES FTNLRSRGSS LCDLAILVVD
0801: IMHGLEPQTI ESLNLLRMRN TEFIVALNKV DRLYGWKTCK NAPIVKAMKQ QNKDVINEFN LRLKNIINEF QEQGLNTELY YKNKDMGDTF SIVPTSAISG
0901: EGVPDLLLWL VQWAQKTMVE KLTYVDEVQC TVLEVKVIEG HGTTIDVVLV NGELHEGDQI VVCGLQGPIV TTIRALLTPH PMKELRVKGT YLHYKEIKAA
1001: QGIKITAQGL EHAIAGTALH VVGPDDDIEA IKESAMEDME SVLSRIDKSG EGVYVQASTL GSLEALLEYL KSPAVKIPVS GIGIGPVHKK DVMKAGVMLE
1101: RKKEYATILA FDVKVTTEAR ELADEMGVKI FCADIIYHLF DLFKAYIENI KEEKKKESAD EAVFPCVLQI LPNCVFNKKD PIVLGVDVIE GILKIGTPIC
1201: VPGREFIDIG RIASIENNHK PVDYAKKGNK VAIKIVGSNA EEQKMFGRHF DMEDELVSHI SRRSIDILKS NYRDELSLEE WKLVVKLKNI FKIQ
Arabidopsis Description
Eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:UniProtKB/TrEMBL;Acc:F4I420]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.