CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13881	Canola	cytosol	81.69	53.08
CDX81960	Canola	cytosol	33.9	35.84
PGSC0003DMT400030470	Potato	cytosol	7.12	32.81
PGSC0003DMT400029834	Potato	cytosol	7.12	32.81
CDY13882	Canola	cytosol	32.54	32.65
PGSC0003DMT400033284	Potato	cytosol	13.56	27.97
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	23.39	25.0
TraesCS7B01G382100.1	Wheat	cytosol	29.15	16.57
PGSC0003DMT400071616	Potato	cytosol	35.93	15.12
Solyc03g058380.2.1	Tomato	nucleus	36.61	14.19
GSMUA_Achr5P09710_001	Banana	cytosol	36.27	11.93
TraesCS7A01G479800.2	Wheat	mitochondrion, plastid	32.2	11.46
CDY33673	Canola	cytosol	35.93	10.52
CDY45947	Canola	nucleus	38.98	10.03
OQU79180	Sorghum	nucleus	28.81	9.9
CDX96600	Canola	cytosol	32.54	9.59
CDY20385	Canola	nucleus	38.64	9.37
Solyc03g058350.2.1	Tomato	nucleus	36.27	9.26
Solyc06g054400.2.1	Tomato	nucleus	35.25	9.11
Os05t0592600-01	Rice	nucleus	37.29	9.11
KXG22680	Sorghum	nucleus	37.63	8.58
Zm00001d009749_P001	Maize	nucleus	37.29	8.51
HORVU1Hr1G094740.1	Barley	nucleus	35.93	8.22
TraesCS1A01G438600.2	Wheat	nucleus	35.93	8.21
TraesCS1D01G446400.1	Wheat	golgi	35.93	8.18
TraesCS1B01G472500.1	Wheat	nucleus	35.93	8.15
VIT_18s0076g00310.t01	Wine grape	nucleus	37.29	8.14
KRG91641	Soybean	nucleus	36.95	8.04
KRH35157	Soybean	nucleus	36.27	7.96
PGSC0003DMT400079119	Potato	nucleus	35.25	7.78
TraesCS1D01G446900.2	Wheat	nucleus	35.93	7.55
CDY25276	Canola	mitochondrion	15.59	6.25
CDY05134	Canola	mitochondrion	14.92	6.0
PGSC0003DMT400013995	Potato	nucleus	26.1	5.95
CDY26262	Canola	cytosol	13.22	5.88
CDX90791	Canola	mitochondrion	14.24	5.73
KRG88874	Soybean	cytosol	7.46	5.68
GSMUA_Achr1P05220_001	Banana	nucleus	34.58	5.62
CDY49760	Canola	plastid	7.46	5.05
CDX96781	Canola	plastid	13.56	4.06
CDY48480	Canola	plastid	13.22	4.05
CDX83919	Canola	plastid	13.22	4.04
CDX94227	Canola	mitochondrion, plastid	5.42	2.87

Protein Annotations

EnsemblPlants:CDX81961	EnsemblPlantsGene:GSBRNA2T00136934001	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	InterPro:IPR036925	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	InterPro:Transl_B-barrel_sf	PANTHER:PTHR43381	PANTHER:PTHR43381:SF4	PFAM:PF11987
ProteinID:CDX81961	ProteinID:CDX81961.1	SEG:seg	SUPFAM:SSF50447	SUPFAM:SSF52156	UniParc:UPI0004EDD1D7
MapMan:35.2	:	:	:	:	:

Description

BnaC08g36400D

Coordinates

chrLK031826:-:1684416..1686383

Molecular Weight (calculated)

33057.8 Da

IEP (calculated)

4.835

GRAVY (calculated)

-0.074

Length

295 amino acids

Sequence
(BLAST)

001: MANWSYDVTR LMDRDVGTIP NYSGEESSGR ESERFGKEIY IMDFKRSGEG VLAVASTTYS LNELVEFLES PTVKIPVGAL DLGTITPVEI WKAFEMSDRK
101: RYFSTILAFD VDVTPEAIQL AEQLQVKVIC GGMLERLHYQ FKEHIEELGE DPKMEDEAIF PGILSILPNA VFSKEDPIVL GVLVVEGFIK VGVPISYVRT
201: AGCLDLGRIA WIEKHRQPVD VASLGDTVII KIVASNPEEK RQALSFGSHY DTSDDILVTR ISRGSLFALR DHHKDKLSFS DMKVLSDLKR VLNIK

Best Arabidopsis Sequence Match ( AT1G21160.1 )
(BLAST)

0001: MDPRNSSAWG GGDGLPLISS MGGVESKNRC CVTDDDGSIG TKLCEKPKAE EIDFSARKKK LKSKKGGSVS FALLDVEDDK EEAEDGDDKN PSIRSDEVVG
0101: ETSMSKKKKK DKSGKHGVCE EDDDADKILA QHGITTTVST GPEAEIALAQ PEQVASADGA VDKDGEEKTV ESATAKKKKK KKDKDKKASA SLAISSVEAK
0201: EDRQGKKDVK IKVAEKKVPK HVREKQETLA RWKEAEDGKK KEEEERLRKE EEERRIEEER EREAEEIRQK RKIRKMEKKQ EGLILTAKQK RDAAKNEAFR
0301: KRVLTDAGSL LVADKNGDSS KRPIYGNKNK LACKKANDPA SVQAKGDGET KENHAADEPC TLPDLVSVED RRVGIIESVD TEETHESVDV SQENGDEEDV
0401: WDAKTNFTIK GDSDDEEEKP QPVFKKGLKD TASKAHDSVP GADRPTVKPG GSGKPKTAAK KAMPKVDDTT RPKDTSKKDE GLVLNELAKE VEENLRSPIC
0501: CIMGHVDSGK TKLLDCIRGT NVQEGEAGGI TQQIGATFFP AENIRERTKE LQANAKLKVP GILVIDTPGH ESFTNLRSRG SNLCDLAILV VDIMRGLEPQ
0601: TIESLNLLRR RNVKFIIALN KVDRLYGWEK SKNAPIRKTM MQQTGDVVKE FKMRLNRVQN QFQEQGLNSM LYYKNREMGE TISILPASAI SGEGIPDLLL
0701: FLVQWAQKTM VEKLTYVDKV QCTVLEVKVI EGHGITVDVV LVNGVLREGD QIVVCGSQGP IVTTIRSLLT PYPMNEMRVT GTYMPHREVK AAQGIKIAAQ
0801: GLEHAIAGTA LHVIGPNEDM EEAKKNAMED IESVMNRIDK SGEGVYVQAS TLGSLEALLE FLKSSDVKIP VSGIGIGPVH KKDIMKAGVM LEKKKEFATI
0901: LAFDVKISAE ARELADKMGV KIFCDDTIYC LFDKFKSYIE GIKEEKKKET ACEAVFPCIL QILPNHIYNQ RDPIILGVKV NDGILKVGTP ICIVKRIENV
1001: RVFMDIGRVS SIKNNNNMPV DYARKGQEVA IKIIASNPEE QKMFGRHFGV DDRLISHISS RSVDVIRTNY WNELSNDEKD LVLRLKRIFK IQ

Arabidopsis Description

Eukaryotic translation initiation factor 2 (eIF-2) family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.