CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48578	Soybean	cytosol, extracellular	14.0	68.42
CDY25276	Canola	mitochondrion	81.69	61.82
AT4G11160.2	Thale cress	plastid	78.46	58.82
CDY05134	Canola	mitochondrion	75.58	57.44
CDX90791	Canola	mitochondrion	75.4	57.3
GSMUA_Achr11P...	Banana	cytosol	51.53	49.06
VIT_14s0060g02210.t01	Wine grape	cytosol, plastid	60.5	46.48
PGSC0003DMT400031711	Potato	mitochondrion	60.5	45.79
Solyc08g081900.2.1	Tomato	mitochondrion	60.32	45.65
Os09t0515500-01	Rice	mitochondrion	58.53	45.53
KXG26389	Sorghum	mitochondrion	57.81	45.22
KRG96646	Soybean	mitochondrion	57.27	44.43
KRH68380	Soybean	mitochondrion	57.27	44.43
TraesCS1D01G333900.1	Wheat	mitochondrion	56.55	44.24
TraesCS1B01G345100.2	Wheat	mitochondrion	56.01	43.82
HORVU1Hr1G077340.1	Barley	mitochondrion	56.01	43.82
TraesCS1A01G331200.1	Wheat	mitochondrion	55.83	43.68
Zm00001d003556_P003	Maize	mitochondrion	57.27	43.4
CDY26262	Canola	cytosol	30.52	25.64
CDY48480	Canola	plastid	32.32	18.69
CDX96781	Canola	plastid	32.5	18.36
CDX83919	Canola	plastid	31.6	18.22
CDY49760	Canola	plastid	11.67	14.91
CDY33673	Canola	cytosol	19.39	10.71
CDX96600	Canola	cytosol	19.03	10.59
CDY45947	Canola	nucleus	19.93	9.68
CDY20385	Canola	nucleus	19.75	9.04
CDY13881	Canola	cytosol	6.1	7.49
CDX81960	Canola	cytosol	3.23	6.45
CDY13882	Canola	cytosol	3.23	6.12
CDX81961	Canola	cytosol	2.87	5.42

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.300	GO:A0A078DZ75	EnsemblPlants:CDX94227	ProteinID:CDX94227
ProteinID:CDX94227.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00157180001
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	PFscan:PS51722	PANTHER:PTHR43381
PANTHER:PTHR43381:SF1	SUPFAM:SSF50447	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like
InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EE3C04
SEG:seg	:	:	:	:	:

Description

BnaC02g28870D

Coordinates

chrLK031880:-:8661..11483

Molecular Weight (calculated)

60350.9 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.159

Length

557 amino acids

Sequence
(BLAST)

001: MALSHLGKKG IETSFKRGLV LPRVPASTER HISSTFSKST SGSVAFSFAR YINGFGFSSP NHESFPTFTS IRCFHVSRET LARRKEDPDR QLSHRELKKQ
101: TVKTKGKFSK REKKTDKPPV EAPYVPPRLQ RLAKGLAEKT VDVFEGMTLL EFSKRTGESL AVLQSILLNV GETVSSEFDA ISIDVAELLA MEIGINVRRQ
201: HTTEGSQILP RPPVVTVMGH VDHGKTSLLD ALRNTSVAAR EAGGITQHVG AFVVGMPDSG TSITFLDTPG HAAFSEMRAR GAAVTDIVVL VVAADDGVMP
301: QTLEAIAHAR SANVPIVVAI NKCDKPGANP ERVKNQLAAE GIELEDIGGN VQVVEVSAMK STGLDKLEEA LLLEAVDMDL KARVEGPAQA YVVEARLDKG
401: RGPLATIIVK AGTLVSGHHV VIGSQWGRLR AIRDMAGKQT DRATPAMPVE IEGLKGLPMA GDDVIVVESE ERAKMLSEGR KRKYERDRLL KAEEARVAEA
501: EKKEAESEEG FVRVELPIIV KSDVQGTAQA VADALRTLNS PQVRILWCLL LIGSMCL

Best Arabidopsis Sequence Match ( AT4G11160.1 )
(BLAST)

001: MTSRHLGKKG IQASFRIGLV LPRVVASTER QISSTVLKRA SESVSFSFAP YINGFGFSSL SNWSRSYESF PTETSIRYFH ASRETLAKRK EDADRLLSHR
101: ERKKQTVKTK GKFSKREKKT DKPPVEAPYV PPRLKRLAKG LPGKTVDIFE GMTLLELSKR TGESVAVLQS ILINVGETFS SEFDTISVDV AELLAMEIGI
201: NVRRQHSTEG SEILPRPPVV TVMGHVDHGK TSLLDALRNT SVAAREAGGI TQHVGAFVVG MPDSGTSITF LDTPGHAAFS EMRARGAAVT DIVVLVVAAD
301: DGVMPQTLEA IAHARSANVP VVVAINKCDK PGANPEKVKY QLTSEGIELE DIGGNVQAVE VSAAKSTGLD KLEEALLLQA VDMDLKARVD GPAQAYVVEA
401: RLDKGRGPLA TIIVKAGTLV RGQHVVIGCQ WGRLRAIRDM IGKTTDRATP AMPVEIEGLK GLPMAGDDVI VVESEERARM LSEGRKRKYE KDRLLKAEEA
501: RLEEAAARLE TESEEGFVRV ELPIVVKSDV QGTAQAVADA LRTLNSPQVS VNIVHSGVGA ISHSDLDLAQ ACGACIVGFN VKGGSTGNLS AAQGSVKVFH
601: HRVIYHLLED IGNLIVEKAP GVSEMEVSGE AEVLSIFKIL GKRRTEEDGV NIAGCKVMDG RVCRSGLMRL LRSGEVVFEG SCASLKREKQ DVEQVGKGNE
701: CGLVFGDWND FRVGDVIQCM EPVIRKPKFI SSESGAVRIE C

Arabidopsis Description

At4g11160 [Source:UniProtKB/TrEMBL;Acc:Q67ZW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.