CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033153.1-P	Field mustard	cytosol	86.68	92.2
CDY05134	Canola	mitochondrion	83.97	84.31
AT4G11160.2	Thale cress	plastid	84.78	83.98
CDX94227	Canola	mitochondrion, plastid	61.82	81.69
CDX90791	Canola	mitochondrion	77.58	77.9
KRH48578	Soybean	cytosol, extracellular	10.87	70.18
GSMUA_Achr11P...	Banana	cytosol	53.12	66.84
VIT_14s0060g02210.t01	Wine grape	cytosol, plastid	61.68	62.62
PGSC0003DMT400031711	Potato	mitochondrion	62.5	62.5
Solyc08g081900.2.1	Tomato	mitochondrion	61.96	61.96
KRH68380	Soybean	mitochondrion	60.05	61.56
KRG96646	Soybean	mitochondrion	58.97	60.45
Os09t0515500-01	Rice	mitochondrion	57.47	59.08
HORVU1Hr1G077340.1	Barley	mitochondrion	56.66	58.57
TraesCS1A01G331200.1	Wheat	mitochondrion	56.39	58.29
TraesCS1B01G345100.2	Wheat	mitochondrion	56.25	58.15
KXG26389	Sorghum	mitochondrion	55.84	57.72
TraesCS1D01G333900.1	Wheat	mitochondrion	55.71	57.58
Zm00001d003556_P003	Maize	mitochondrion	56.11	56.19
CDY26262	Canola	cytosol	29.89	33.18
CDY48480	Canola	plastid	31.52	24.09
CDX83919	Canola	plastid	31.39	23.91
CDX96781	Canola	plastid	31.39	23.43
CDY13882	Canola	cytosol	7.07	17.69
CDY49760	Canola	plastid	10.33	17.43
CDX81960	Canola	cytosol	6.52	17.2
CDX81961	Canola	cytosol	6.25	15.59
CDY33673	Canola	cytosol	19.7	14.38
CDX96600	Canola	cytosol	18.89	13.89
CDY13881	Canola	cytosol	8.42	13.66
CDY45947	Canola	nucleus	19.43	12.47
CDY20385	Canola	nucleus	19.29	11.67

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	GO:A0A078GIR3	UniProt:A0A078GIR3
EnsemblPlants:CDY25276	ProteinID:CDY25276	ProteinID:CDY25276.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00029333001	InterPro:IPR000795	InterPro:IPR036925	HAMAP:MF_00100_B	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF11987	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF1	SUPFAM:SSF50447
SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EF1892
SEG:seg	:	:	:	:	:

Description

BnaA02g21800DBnaA02g21800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIR3]

Coordinates

chrLK032172:+:403604..407219

Molecular Weight (calculated)

79358.8 Da

IEP (calculated)

7.617

GRAVY (calculated)

-0.153

Length

736 amino acids

Sequence
(BLAST)

001: MALRHLGKKG IETSFKRGLV LPRVPASTER HISSTFSKST SESVAFSFAR YINGFGFSSP NHESFPTLTS ISRCFHASRE TLARRKEDPD RQLSHRELKK
101: QTVKTKGKFS KREKKTDKPP VEAPYVPPRL QRLAKGLAEK TVDVFEGMTL LEFSKRTGES LAVLQSILLN VGETVGSEFD AISIDVAELL AMEIGINVKR
201: QHTTEGSQIL PRPPVVTVMG HVDHGKTSLL DALRNTSVAA KEAGGITQHV GAFVVGMPDS GPSITFLDTP GHAAFSEMRA RGAAVTDIVV LVVAADDGVM
301: PQTLEAIAHA RSANVPIVVA INKCDKPGAN PERVKNQLAA EGIELEDIGG NVQVVEVSAM KSTGLDKLEE ALLLEAVDMD LKARVEGPAQ AYVVEARLDK
401: GRGPLATIIV KAGTLVSGHH VVIGSQWGRL RAIRDMAGKQ TDRATPAMPV EIEGLKGLPM AGDDVIVVES EERAKMLSEG RKRKYERDRL LKAEEARVAE
501: AEKKEAESEE GFIRVELPII VKSDVQGTAQ AVADALRTLN SPQVFVNIVH SGVGAVSHSD LERAQACGAC IVAFNVKGGG SGNLSAAQAS VKVFHHRVIY
601: HLLEDIGKLI VEKAPGVSEL EVAGEAEVLS IFKVLGKRRS EEDGVSIAGC KVMDGRVCRS GMMRLLRSGE VLFEGSCASL KREKQDVEQV GKGNECGLVM
701: GEWNDFRVGD VIQCMEAVIR KPKFVSSESG AVRIEC

Best Arabidopsis Sequence Match ( AT4G11160.1 )
(BLAST)

001: MTSRHLGKKG IQASFRIGLV LPRVVASTER QISSTVLKRA SESVSFSFAP YINGFGFSSL SNWSRSYESF PTETSIRYFH ASRETLAKRK EDADRLLSHR
101: ERKKQTVKTK GKFSKREKKT DKPPVEAPYV PPRLKRLAKG LPGKTVDIFE GMTLLELSKR TGESVAVLQS ILINVGETFS SEFDTISVDV AELLAMEIGI
201: NVRRQHSTEG SEILPRPPVV TVMGHVDHGK TSLLDALRNT SVAAREAGGI TQHVGAFVVG MPDSGTSITF LDTPGHAAFS EMRARGAAVT DIVVLVVAAD
301: DGVMPQTLEA IAHARSANVP VVVAINKCDK PGANPEKVKY QLTSEGIELE DIGGNVQAVE VSAAKSTGLD KLEEALLLQA VDMDLKARVD GPAQAYVVEA
401: RLDKGRGPLA TIIVKAGTLV RGQHVVIGCQ WGRLRAIRDM IGKTTDRATP AMPVEIEGLK GLPMAGDDVI VVESEERARM LSEGRKRKYE KDRLLKAEEA
501: RLEEAAARLE TESEEGFVRV ELPIVVKSDV QGTAQAVADA LRTLNSPQVS VNIVHSGVGA ISHSDLDLAQ ACGACIVGFN VKGGSTGNLS AAQGSVKVFH
601: HRVIYHLLED IGNLIVEKAP GVSEMEVSGE AEVLSIFKIL GKRRTEEDGV NIAGCKVMDG RVCRSGLMRL LRSGEVVFEG SCASLKREKQ DVEQVGKGNE
701: CGLVFGDWND FRVGDVIQCM EPVIRKPKFI SSESGAVRIE C

Arabidopsis Description

At4g11160 [Source:UniProtKB/TrEMBL;Acc:Q67ZW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.