Factsheet for Zm00001d003556_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26389	Sorghum	mitochondrion	90.75	93.68
Os09t0515500-01	Rice	mitochondrion	84.35	86.59
TraesCS1D01G333900.1	Wheat	mitochondrion	80.41	83.01
TraesCS1A01G331200.1	Wheat	mitochondrion	80.0	82.58
TraesCS1B01G345100.2	Wheat	mitochondrion	79.86	82.44
HORVU1Hr1G077340.1	Barley	mitochondrion	79.59	82.16
GSMUA_Achr11P...	Banana	cytosol	62.18	78.12
KRH48578	Soybean	cytosol, extracellular	11.7	75.44
VIT_14s0060g02210.t01	Wine grape	cytosol, plastid	67.76	68.69
PGSC0003DMT400031711	Potato	mitochondrion	64.49	64.4
Solyc08g081900.2.1	Tomato	mitochondrion	64.49	64.4
KRG96646	Soybean	mitochondrion	62.72	64.21
KRH68380	Soybean	mitochondrion	61.63	63.09
Bra033153.1-P	Field mustard	cytosol	58.37	61.99
CDX94227	Canola	mitochondrion, plastid	43.4	57.27
AT4G11160.2	Thale cress	plastid	57.14	56.53
CDY25276	Canola	mitochondrion	56.19	56.11
CDY05134	Canola	mitochondrion	55.51	55.66
CDX90791	Canola	mitochondrion	54.15	54.3
Bra000738.1-P	Field mustard	cytosol	54.15	38.83
Zm00001d017588_P001	Maize	plastid	10.61	18.53
Zm00001d009749_P001	Maize	nucleus	16.6	9.44

Protein Annotations

MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300	EntrezGene:606453	UniProt:A0A1D6E9T3
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR036925	HAMAP:MF_00100_B
ProteinID:ONM17155.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	PFscan:PS51722	PANTHER:PTHR43381
PANTHER:PTHR43381:SF1	SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487
InterPro:Transl_B-barrel_sf	UniParc:UPI0008427794	EnsemblPlantsGene:Zm00001d003556	EnsemblPlants:Zm00001d003556_P003	EnsemblPlants:Zm00001d003556_T003	SEG:seg

Description

Putative translation initiation factor IF-2

Coordinates

chr2:-:47890237..47901925

Molecular Weight (calculated)

79936.8 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.166

Length

735 amino acids

Sequence
(BLAST)

001: MAWRMMRRKD FHTGLVTLAF RKDLGFKKFF SSGKIGNLSQ VYGSDKPKYS ANCMPSNHFT IRNFNAGVYL LAWSQKREDV VGLKAPKKEK RVKKENRTQP
101: PVEAPYVAPK TKISIKPVPD KTVEIFDGMT LLDLSKRTGA YISTLQGILA DLGEKVESEF DSISIDLAEL VAMELGVNSR RMHTGEGKNE PRPAVVTVMG
201: HVDHGKTSLL DALRQTSVAA KEAGGITQHI GAFVVEMSSG ASITFLDTPG HAAFSAMRAR GAAVTDIVVL VVAADDGIMP QTLEAMSHAK AANVPIVVAI
301: NKCDKSGADP ERVRIQLGSE GLLLEDMGGD VQVVEISAVT KTGLDKLEEA LLLQAEMMDL KARIDGPAQA FVVEARVDRG RGPLATAIVK YGTLVSGQHI
401: VVGAEWGRIR SLRDTAGNIT QSAKPAMPIE IEGLKGLPMA GDDVVVVDSE ERARMLSHGR KKKQEKDRLR KIDEGMAEEL EIKEETPERV EMTIIVKADV
501: QGSVQAVTDA LRSLNSAQVF VNVVHVGVGP ISQHDIDLAQ ACGAYIVGFN IRSPPSPITQ AAARANIKHL ICIYSNIKWS LPQERCFISN QVLLHKVIYH
601: LLEEMGKAIV EKAPGTAETQ VSGEAEVLNI FELKGRSKSK GPDVKIAGCR ITDGHFSKSG TMRLLRSGDV VFEGPCESLK REKKDAETVE KGNDCGLVIQ
701: DCDDFQVGDI IQCVEQVIRK PKFISTQSGS VRIEC

Best Arabidopsis Sequence Match ( AT4G11160.1 )
(BLAST)

001: MTSRHLGKKG IQASFRIGLV LPRVVASTER QISSTVLKRA SESVSFSFAP YINGFGFSSL SNWSRSYESF PTETSIRYFH ASRETLAKRK EDADRLLSHR
101: ERKKQTVKTK GKFSKREKKT DKPPVEAPYV PPRLKRLAKG LPGKTVDIFE GMTLLELSKR TGESVAVLQS ILINVGETFS SEFDTISVDV AELLAMEIGI
201: NVRRQHSTEG SEILPRPPVV TVMGHVDHGK TSLLDALRNT SVAAREAGGI TQHVGAFVVG MPDSGTSITF LDTPGHAAFS EMRARGAAVT DIVVLVVAAD
301: DGVMPQTLEA IAHARSANVP VVVAINKCDK PGANPEKVKY QLTSEGIELE DIGGNVQAVE VSAAKSTGLD KLEEALLLQA VDMDLKARVD GPAQAYVVEA
401: RLDKGRGPLA TIIVKAGTLV RGQHVVIGCQ WGRLRAIRDM IGKTTDRATP AMPVEIEGLK GLPMAGDDVI VVESEERARM LSEGRKRKYE KDRLLKAEEA
501: RLEEAAARLE TESEEGFVRV ELPIVVKSDV QGTAQAVADA LRTLNSPQVS VNIVHSGVGA ISHSDLDLAQ ACGACIVGFN VKGGSTGNLS AAQGSVKVFH
601: HRVIYHLLED IGNLIVEKAP GVSEMEVSGE AEVLSIFKIL GKRRTEEDGV NIAGCKVMDG RVCRSGLMRL LRSGEVVFEG SCASLKREKQ DVEQVGKGNE
701: CGLVFGDWND FRVGDVIQCM EPVIRKPKFI SSESGAVRIE C

Arabidopsis Description

At4g11160 [Source:UniProtKB/TrEMBL;Acc:Q67ZW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.