Factsheet for PGSC0003DMT400031711

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081900.2.1	Tomato	mitochondrion	98.1	98.1
GSMUA_Achr11P...	Banana	cytosol	60.46	76.07
KRH48578	Soybean	cytosol, extracellular	11.55	74.56
VIT_14s0060g02210.t01	Wine grape	cytosol, plastid	73.37	74.48
Os09t0515500-01	Rice	mitochondrion	66.03	67.88
KRH68380	Soybean	mitochondrion	66.03	67.69
KRG96646	Soybean	mitochondrion	65.35	66.99
KXG26389	Sorghum	mitochondrion	63.99	66.15
Bra033153.1-P	Field mustard	cytosol	61.41	65.32
HORVU1Hr1G077340.1	Barley	mitochondrion	63.04	65.17
TraesCS1A01G331200.1	Wheat	mitochondrion	62.77	64.89
TraesCS1D01G333900.1	Wheat	mitochondrion	62.77	64.89
TraesCS1B01G345100.2	Wheat	mitochondrion	62.64	64.75
Zm00001d003556_P003	Maize	mitochondrion	64.4	64.49
AT4G11160.2	Thale cress	plastid	64.27	63.66
CDY25276	Canola	mitochondrion	62.5	62.5
CDX94227	Canola	mitochondrion, plastid	45.79	60.5
CDY05134	Canola	mitochondrion	59.78	60.03
CDX90791	Canola	mitochondrion	58.42	58.66
Bra000738.1-P	Field mustard	cytosol	58.29	41.85
PGSC0003DMT400079833	Potato	plastid	32.07	23.44
PGSC0003DMT400030470	Potato	cytosol	1.9	21.88
PGSC0003DMT400029834	Potato	cytosol	1.9	21.88
PGSC0003DMT400071616	Potato	cytosol	16.58	17.4
PGSC0003DMT400033284	Potato	cytosol	3.26	16.78
PGSC0003DMT400011181	Potato	cytosol, mitochondrion	5.84	15.58
PGSC0003DMT400079119	Potato	nucleus	18.07	9.95
PGSC0003DMT400013995	Potato	nucleus	16.71	9.51

Protein Annotations

EntrezGene:102600657	EntrezGene:102601003	MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR036925	UniProt:M1AW32
HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF11987	EnsemblPlantsGene:PGSC0003DMG400012166	PGSC:PGSC0003DMG400012166
EnsemblPlants:PGSC0003DMT400031711	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF1	SUPFAM:SSF50447	SUPFAM:SSF52156
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3
InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487	InterPro:Transl_B-barrel_sf	UniParc:UPI000295AA6E	RefSeq:XP_006343899.1
SEG:seg	:	:	:	:	:

Description

Translation initiation factor IF-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400012166]

Coordinates

chr8:-:55540739..55548449

Molecular Weight (calculated)

79091.9 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.099

Length

736 amino acids

Sequence
(BLAST)

001: MAWRAAGKKG TFTSLTKALA VRSRYTAASV SKSNLEEVQR TIPVLVGQIQ GCFLHAAQWK SNCTNLLTYR TSIRCFHASP ETLAWKKEPE ALGLKIQKKG
101: KFKKRTKDSS PPVEAPYVPP KLKRAASSSL SDRTVEIFEG MTIVELAKRC GVSIPVVQDI LKNVGEKVDS EYDPLSIDIS ELVAMEIGVN VRRLHSNEGA
201: EVLPRPPVVT VMGHVDHGKT SLLDALRLTS VAAKEAGGIT QHLGAFVVGM SSGASITFLD TPGHAAFSAM RQRGAAVTDI VVLVVAADDG VMPQTLEAMS
301: HAKAADVPIV VAVNKCDKPA ANPEKVKIQL ATEGLALEEM GGDIQVVEVS AVTKTGLDKL EEALLLQAEM MDLKSRVDGP AQAYVVEARV DRGRGPLATA
401: IVKAGTLVCG QHVVVGAEWG KIRAIRDMLG KSTDRARPAM PVEIEGLKGL PMAGDDIIVV HSEERARMLS AGRKKKFEKD RLGRKMDAEK LGSLVSESNL
501: EDEEGEVEEK PKRVEMTIIV KADVQGTVQA VTDSLKSLDS PQVFVNIVHG GVGPISESDV DLAQACGAFI VGFSIPTPPG SINQAANKAG IKIKIHRVIY
601: HLLEDIGNSI VEKAPGTFET QVSGEAQILS IFELKGRSKA KGDDVKIAGC RVIDGRLIRS STMRLLRSGE VVFEGSCASL KREKQDVEAV GKGNECGLVI
701: QNWDDFKVGD VIQCLEQVNR KPKFISSQSG AVRIEC

Best Arabidopsis Sequence Match ( AT4G11160.1 )
(BLAST)

001: MTSRHLGKKG IQASFRIGLV LPRVVASTER QISSTVLKRA SESVSFSFAP YINGFGFSSL SNWSRSYESF PTETSIRYFH ASRETLAKRK EDADRLLSHR
101: ERKKQTVKTK GKFSKREKKT DKPPVEAPYV PPRLKRLAKG LPGKTVDIFE GMTLLELSKR TGESVAVLQS ILINVGETFS SEFDTISVDV AELLAMEIGI
201: NVRRQHSTEG SEILPRPPVV TVMGHVDHGK TSLLDALRNT SVAAREAGGI TQHVGAFVVG MPDSGTSITF LDTPGHAAFS EMRARGAAVT DIVVLVVAAD
301: DGVMPQTLEA IAHARSANVP VVVAINKCDK PGANPEKVKY QLTSEGIELE DIGGNVQAVE VSAAKSTGLD KLEEALLLQA VDMDLKARVD GPAQAYVVEA
401: RLDKGRGPLA TIIVKAGTLV RGQHVVIGCQ WGRLRAIRDM IGKTTDRATP AMPVEIEGLK GLPMAGDDVI VVESEERARM LSEGRKRKYE KDRLLKAEEA
501: RLEEAAARLE TESEEGFVRV ELPIVVKSDV QGTAQAVADA LRTLNSPQVS VNIVHSGVGA ISHSDLDLAQ ACGACIVGFN VKGGSTGNLS AAQGSVKVFH
601: HRVIYHLLED IGNLIVEKAP GVSEMEVSGE AEVLSIFKIL GKRRTEEDGV NIAGCKVMDG RVCRSGLMRL LRSGEVVFEG SCASLKREKQ DVEQVGKGNE
701: CGLVFGDWND FRVGDVIQCM EPVIRKPKFI SSESGAVRIE C

Arabidopsis Description

At4g11160 [Source:UniProtKB/TrEMBL;Acc:Q67ZW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.