Factsheet for PGSC0003DMT400011181

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030470	Potato	cytosol	19.93	85.94
PGSC0003DMT400029834	Potato	cytosol	19.57	84.38
PGSC0003DMT400033284	Potato	cytosol	38.41	74.13
CDX81961	Canola	cytosol	25.0	23.39
CDX81960	Canola	cytosol	23.55	23.3
Bra031112.1-P	Field mustard	cytosol	23.55	22.11
CDY13882	Canola	cytosol	23.55	22.11
Solyc03g058380.2.1	Tomato	nucleus	52.9	19.19
PGSC0003DMT400071616	Potato	cytosol	46.01	18.12
TraesCS7B01G382100.1	Wheat	cytosol	29.71	15.8
CDY13881	Canola	cytosol	25.0	15.2
AT2G27700.2	Thale cress	cytosol	25.72	14.79
Bra031113.1-P	Field mustard	cytosol	24.28	14.76
GSMUA_Achr5P09710_001	Banana	cytosol	44.57	13.71
Solyc03g058350.2.1	Tomato	nucleus	52.54	12.54
CDY33673	Canola	cytosol	41.67	11.41
CDY45947	Canola	nucleus	46.74	11.25
Bra016430.1-P	Field mustard	cytosol	41.3	11.01
CDY20385	Canola	nucleus	46.74	10.6
OQU79180	Sorghum	nucleus	32.61	10.48
CDX96600	Canola	cytosol	37.68	10.39
Bra008279.1-P	Field mustard	nucleus	46.74	10.17
AT1G21160.1	Thale cress	cytosol	40.22	10.16
Os05t0592600-01	Rice	nucleus	44.2	10.11
AT1G76810.1	Thale cress	nucleus	46.38	9.89
TraesCS7A01G479800.2	Wheat	mitochondrion, plastid	29.71	9.89
PGSC0003DMT400079119	Potato	nucleus	47.83	9.87
VIT_18s0076g00310.t01	Wine grape	nucleus	47.83	9.76
KRH35157	Soybean	nucleus	47.1	9.67
KRG91641	Soybean	nucleus	47.1	9.59
HORVU1Hr1G094740.1	Barley	nucleus	44.57	9.54
TraesCS1A01G438600.2	Wheat	nucleus	44.57	9.53
TraesCS1D01G446400.1	Wheat	golgi	44.57	9.49
TraesCS1B01G472500.1	Wheat	nucleus	44.57	9.46
KXG22680	Sorghum	nucleus	44.2	9.44
Zm00001d009749_P001	Maize	nucleus	43.84	9.36
TraesCS1D01G446900.2	Wheat	nucleus	44.57	8.76
AT1G76720.2	Thale cress	cytosol	37.68	8.5
CDY49760	Canola	plastid	12.68	8.03
PGSC0003DMT400013995	Potato	nucleus	32.25	6.88
GSMUA_Achr1P05220_001	Banana	nucleus	44.93	6.83
PGSC0003DMT400031711	Potato	mitochondrion	15.58	5.84
KRG88874	Soybean	cytosol	7.97	5.68
PGSC0003DMT400079833	Potato	plastid	12.68	3.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400011181	EnsemblPlantsGene:PGSC0003DMG400004377	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	InterPro:IPR036925	InterPro:TIF_IF2
InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	InterPro:Transl_B-barrel_sf	ncoils:Coil	PANTHER:PTHR43381	PANTHER:PTHR43381:SF4
PFAM:PF11987	PGSC:PGSC0003DMG400004377	SEG:seg	SUPFAM:SSF50447	SUPFAM:SSF52156	UniParc:UPI000296ECE9
UniProt:M0ZZ58	MapMan:35.2	:	:	:	:

Description

Translation initiation factor if-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004377]

Coordinates

chr9:+:33511852..33514625

Molecular Weight (calculated)

30570.6 Da

IEP (calculated)

9.317

GRAVY (calculated)

-0.155

Length

276 amino acids

Sequence
(BLAST)

001: MEDMKSVMSR IDKTGEGVYV QATTLGSLEA LLEFLKTPGV SIPVSGIGIG PVHKKNVIKA SVMLEKKKEY STILAFDVKV TQGARELSDE LGVKVFMADI
101: IYHLFDQFKA YIDTIKEEKK KEVAEEAVLP CVLKIIPNCV FKKKDPIVLG VDVLKGIFRI EELELKKKQQ ETKAIETSRK AIPSMEKCKK QLMIANSDFM
201: EKMEAFSSPV KGVKMSKAQQ SSGDDRASHV SISRKEYGHQ QVRKCCSSSA ISLPQGAASW LVLAIPRNIA SDESII

Best Arabidopsis Sequence Match ( AT1G21160.1 )
(BLAST)

0001: MDPRNSSAWG GGDGLPLISS MGGVESKNRC CVTDDDGSIG TKLCEKPKAE EIDFSARKKK LKSKKGGSVS FALLDVEDDK EEAEDGDDKN PSIRSDEVVG
0101: ETSMSKKKKK DKSGKHGVCE EDDDADKILA QHGITTTVST GPEAEIALAQ PEQVASADGA VDKDGEEKTV ESATAKKKKK KKDKDKKASA SLAISSVEAK
0201: EDRQGKKDVK IKVAEKKVPK HVREKQETLA RWKEAEDGKK KEEEERLRKE EEERRIEEER EREAEEIRQK RKIRKMEKKQ EGLILTAKQK RDAAKNEAFR
0301: KRVLTDAGSL LVADKNGDSS KRPIYGNKNK LACKKANDPA SVQAKGDGET KENHAADEPC TLPDLVSVED RRVGIIESVD TEETHESVDV SQENGDEEDV
0401: WDAKTNFTIK GDSDDEEEKP QPVFKKGLKD TASKAHDSVP GADRPTVKPG GSGKPKTAAK KAMPKVDDTT RPKDTSKKDE GLVLNELAKE VEENLRSPIC
0501: CIMGHVDSGK TKLLDCIRGT NVQEGEAGGI TQQIGATFFP AENIRERTKE LQANAKLKVP GILVIDTPGH ESFTNLRSRG SNLCDLAILV VDIMRGLEPQ
0601: TIESLNLLRR RNVKFIIALN KVDRLYGWEK SKNAPIRKTM MQQTGDVVKE FKMRLNRVQN QFQEQGLNSM LYYKNREMGE TISILPASAI SGEGIPDLLL
0701: FLVQWAQKTM VEKLTYVDKV QCTVLEVKVI EGHGITVDVV LVNGVLREGD QIVVCGSQGP IVTTIRSLLT PYPMNEMRVT GTYMPHREVK AAQGIKIAAQ
0801: GLEHAIAGTA LHVIGPNEDM EEAKKNAMED IESVMNRIDK SGEGVYVQAS TLGSLEALLE FLKSSDVKIP VSGIGIGPVH KKDIMKAGVM LEKKKEFATI
0901: LAFDVKISAE ARELADKMGV KIFCDDTIYC LFDKFKSYIE GIKEEKKKET ACEAVFPCIL QILPNHIYNQ RDPIILGVKV NDGILKVGTP ICIVKRIENV
1001: RVFMDIGRVS SIKNNNNMPV DYARKGQEVA IKIIASNPEE QKMFGRHFGV DDRLISHISS RSVDVIRTNY WNELSNDEKD LVLRLKRIFK IQ

Arabidopsis Description

Eukaryotic translation initiation factor 2 (eIF-2) family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.