Factsheet for VIT_19s0027g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26262	Canola	cytosol	50.94	77.98
Os05t0575300-02	Rice	cytosol	39.41	71.56
PGSC0003DMT400079833	Potato	plastid	67.49	68.02
Solyc07g056020.2.1	Tomato	nucleus, plastid	67.59	67.92
KRH43837	Soybean	nucleus, plastid	66.4	66.73
KRH13635	Soybean	nucleus	66.11	66.11
CDY48480	Canola	plastid	61.97	65.32
AT1G17220.1	Thale cress	plastid	65.02	64.33
Bra025989.1-P	Field mustard	plastid	64.93	64.29
CDX96781	Canola	plastid	62.27	64.1
CDX83919	Canola	plastid	59.61	62.63
Bra016612.1-P	Field mustard	plastid	61.58	61.21
HORVU7Hr1G060530.1	Barley	plastid	55.47	58.46
TraesCS7D01G288700.1	Wheat	plastid	55.27	58.26
KXG22198	Sorghum	plastid	54.38	56.62
GSMUA_Achr3P23270_001	Banana	plastid	53.99	56.38
GSMUA_Achr8P07210_001	Banana	plastid	53.69	56.24
TraesCS7A01G287900.1	Wheat	plastid	36.26	54.28
TraesCS7B01G183700.2	Wheat	plastid	34.78	52.06
Zm00001d017588_P001	Maize	plastid	21.48	51.78
VIT_14s0060g02210.t01	Wine grape	cytosol, plastid	23.55	32.97
VIT_18s0076g00310.t01	Wine grape	nucleus	15.76	11.83

Protein Annotations

EntrezGene:100252450	wikigene:100252450	MapMan:17.7.3.3	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	Gene3D:3.40.50.300
EMBL:AM444718	ProteinID:CAN76368	ProteinID:CAN76368.1	ProteinID:CCB47250	ProteinID:CCB47250.1	ncoils:Coil
UniProt:F6H4W1	EMBL:FN595234	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795
InterPro:IPR036925	EntrezGene:LOC100252450	wikigene:LOC100252450	HAMAP:MF_00100_B	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF11987	PRINTS:PR00315	ScanProsite:PS01176	PFscan:PS51722	PANTHER:PTHR43381	PANTHER:PTHR43381:SF5
SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	TIGR:TC60707	InterPro:TF_GTP-bd_dom
InterPro:TF_IF2_bacterial-like	InterPro:TIF_IF2	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00487
InterPro:Transl_B-barrel_sf	UniParc:UPI000210813C	ArrayExpress:VIT_19s0027g00130	EnsemblPlantsGene:VIT_19s0027g00130	EnsemblPlants:VIT_19s0027g00130.t01	unigene:Vvi.22735
unigene:Vvi.9708	RefSeq:XP_003634785	RefSeq:XP_003634785.1	RefSeq:XP_003634785.2	RefSeq:XP_010645038.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:18431745..18445068

Molecular Weight (calculated)

108158.0 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.302

Length

1015 amino acids

Sequence
(BLAST)

0001: MASLASLVSL GSAGASSSGH FEGSLLLQRR VSLSRRNFGG GKRWGLVSVC KYSGTMTNVI AEEGNAVSVD SSTYRGGGKD EDNGLVLKPA PKPVLKPVNS
0101: VVSWDAGSKI SGDSDDDEKL ENVDERNKVI ESLGEVLEKA EKLETGRLGE LGSKRESGSV DKSPPGTNDN STVGRTVNNS NASKKSKTLK SVWRKGNPVA
0201: TVEKVVKDAS NNITNTEREG PEVGRKVETQ PRIPLRPTQP PLRAQPKLQA KPSVAPPPPV LKKPVILKDV GAAPKSSGID ETDSGKTRER KPILIDKFAS
0301: KRPVVDPMIA QAVLAPPKPG KGPVPGKFKD DYRKKNASTG GSRRRMVAAN DMEIPDDETS ELNVSIPGAA TARKGRKWSK ASRKAARLQA AKDAAPVKVE
0401: ILEVGEEGML TEDLAYNLAI SEGEILGFLY SKGIKPDGVQ TLDKDMVKMI CKEYEVEVID AAGVKVEEMA RKKEILDEED LDKLENRPPV LTIMGHVDHG
0501: KTTLLDHIRK SKVTASEAGG ITQGIGAYKV LVPIDGKPQS CVFLDTPGHE AFGAMRARGA RVTDIAIIVV AADDGIRPQT NEAIAHAKAA GVPIVIAINK
0601: IDKDGANPER VMQELSSIGL MPEDWGGDIP MVQISALKGE NVDDLLETIM LVAELQELKA NPDRNAKGTV IEAGLDKSKG PVATFIVQNG TLKRGDIVVC
0701: GGAFGKVRAL FDDGGKRVDA AGPSIPVQVI GLNNVPIAGD EFEVVGSLDI ARERAEARAE SLRQERISSK AGDGKVTLSS FASAVSGGSQ SGLDLHQLNI
0801: IMKVDVQGSI EAVRQALQVL PQDNVALKFL LQATGDISAS DIDLAVASKA IVIGFNVRAP GSVKSYADTK GVEIRLYKVI YDLIDDVRNA MEGLLDAVEE
0901: EITIGTAEVR ATFTSGSGRI AGCMVKEGKV EKGCGIRVVR DGRAVYVGTL DSLRRVKEIV KEVNAGLECG MGMEDYNDWE VGDIVQAFNK KQKKRTLEEA
1001: SASMTAALEV AGIEK

Best Arabidopsis Sequence Match ( AT1G17220.1 )
(BLAST)

0001: MPSMLVLVGT MPSLASLVSL GGACASVSGT SSSDASYALV KRVSLSRRSV KGTKKWLCRY SVSSSTTTTT ADFIADQNNN SVSIDSNSFR GSKDGDDSEV
0101: VLKQTPKPVL KPPVARVERG LGVNTAPWSK DLSNGGKFDG EEERNKVIES LGEVLDKAEK LEIPKPGNKE GGEAVKPSQP SANSSNSRNG SYANASDGGT
0201: RKTKTMKSVW RKGDAVAAVQ KVVKESPKIF NRGVQTEPRT REEGEVNAKA GTPLAPPQPP FRPQPPVRPQ PMLQGKPMVA PPVKKSPILK DLGMAAKPLV
0301: SEEVDSSVKS KERKPILVDK FASKKKGVDP AASQAVLAPT KPGKGPPSNK FRVEHRNKKN ASASPRRRIV AEDDGDDDAS ISRSGRKGRK WSKASRKAVR
0401: LQAAKDAAPV KAEILEVEEE GMSIEDLAYN LAIGEGDILG YLYSKGIRPD GVHTLDREMV KMICRDYDVE VLDADSVKVE EMAKKRQTFD EEDLDKLEDR
0501: PPVITIMGHV DHGKTTLLDY IRKSKVAASE AGGITQGIGA YKVSVPVDGK LQSCVFLDTP GHEAFGAMRA RGARVTDIAI IVVAADDGIR PQTNEAIAHA
0601: KAAAVPIVIA INKIDKEGAS PDRVMQELSS IGLMPEDWGG DVPMVQISAL KGENVDDLLE TVMLVAELQE LKANPHRNAK GIVIEAGLDK AKGPFATFIV
0701: QKGTLKRGDV VVCGEAFGKV RALFDHSGER VDEAGPSIPV QVIGLNNVPI AGDEFEIVSS LDVAREMAEA RAVSLRDERI SAKAGDGKVT LSSLASAVSA
0801: KKMSGLDLHQ LNIILKVDVQ GSIEAVRQAL QVLPQENVTL KFLLQATGDV SNSDVDLASA SEAIVFGFNV KASGSVKKAA ENKGVEIRLY RVIYELIDDV
0901: RNAMEGLLES VEEQIPIGSA EVRATFSSGS GRVAGCMVNE GKFVKDCGIR VVRKGKTVHV GVLDSLKRVK ENVKEVSAGL ECGIGMDDYD DWIEGDIIEA
1001: FNAVQKRRTL EEASASMSAA IEEAGV

Arabidopsis Description

FUG1Translation initiation factor IF-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.