Factsheet for PGSC0003DMT400025743

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 10
vacuole 5
plasma membrane 5
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081570.2.1	Tomato	plastid	98.51	97.78
VIT_18s0001g14500.t01	Wine grape	endoplasmic reticulum	85.73	84.47
KRH05964	Soybean	endoplasmic reticulum	83.37	82.56
Zm00001d036401_P001	Maize	plasma membrane	81.14	81.34
KXG20895	Sorghum	endoplasmic reticulum	81.27	81.16
GSMUA_Achr7P17770_001	Banana	endoplasmic reticulum	81.89	81.08
GSMUA_Achr1P07620_001	Banana	endoplasmic reticulum	81.89	80.98
Os06t0716700-02	Rice	plasma membrane	81.39	80.79
CDY03477	Canola	endoplasmic reticulum	82.38	80.78
CDY34264	Canola	endoplasmic reticulum	82.26	80.66
AT4G24190.1	Thale cress	endoplasmic reticulum	82.13	80.44
Bra013774.1-P	Field mustard	endoplasmic reticulum	82.01	80.41
Zm00001d014792_P003	Maize	plasma membrane	80.02	79.83
KRH17444	Soybean	nucleus	83.87	79.81
CDX92620	Canola	endoplasmic reticulum	77.92	79.29
CDY08910	Canola	endoplasmic reticulum	76.43	78.67
CDY24830	Canola	endoplasmic reticulum	79.9	78.63
Bra010500.1-P	Field mustard	endoplasmic reticulum	75.81	77.74
TraesCS7D01G517800.1	Wheat	golgi, plastid	79.78	76.91
CDY10992	Canola	endoplasmic reticulum	81.27	75.2
Zm00001d009931_P001	Maize	cytosol	16.63	74.44
HORVU7Hr1G117000.1	Barley	plastid	80.15	72.1
PGSC0003DMT400074374	Potato	cytosol	20.1	52.94
PGSC0003DMT400024594	Potato	cytosol	45.04	51.56
PGSC0003DMT400076601	Potato	cytosol	44.42	51.22
PGSC0003DMT400057003	Potato	cytosol	44.04	50.79
PGSC0003DMT400037336	Potato	cytosol	43.8	50.5
PGSC0003DMT400014217	Potato	cytosol	17.62	49.48
PGSC0003DMT400074377	Potato	cytosol	25.06	49.39
PGSC0003DMT400014812	Potato	cytosol	13.65	45.83
PGSC0003DMT400050556	Potato	cytosol, plastid	41.07	41.53
PGSC0003DMT400015734	Potato	mitochondrion	40.45	41.06

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:102601892	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005886
GO:GO:0006457	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009306	GO:GO:0009409
GO:GO:0009414	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651
GO:GO:0009653	GO:GO:0009934	GO:GO:0009987	GO:GO:0010075	GO:GO:0016020	GO:GO:0016787
GO:GO:0016887	GO:GO:0034976	GO:GO:0040007	GO:GO:0046686	GO:GO:0048046	GO:GO:0051082
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam
InterPro:IPR036890	InterPro:IPR037196	UniProt:M1ALZ6	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518
EnsemblPlantsGene:PGSC0003DMG400009940	PGSC:PGSC0003DMG400009940	EnsemblPlants:PGSC0003DMT400025743	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298
PANTHER:PTHR11528	PANTHER:PTHR11528:SF73	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211
SUPFAM:SSF55874	SignalP:SignalP-noTM	UniParc:UPI000296B833	RefSeq:XP_006342064.1	SEG:seg	:

Description

Endoplasmin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400009940]

Coordinates

chr4:-:70930392..70935843

Molecular Weight (calculated)

92738.3 Da

IEP (calculated)

4.632

GRAVY (calculated)

-0.687

Length

806 amino acids

Sequence
(BLAST)

001: MRKWTIPFVL FLLCLIFLVP DQGRKIQANA EADSDAPVDP PKVEEKFGAV PNGLSTDSDV AKREAESMSR KTLRASAEKF EFQAEVSRLM DILINSLYSN
101: KDIFLRELIS NASDALDKIR FLALTDKEVL GEGDNTKLEI QIKLDKEKKI LFIRDRGVGM TKEDLRKNLG TIAKSGTSAF VEKMQTSGDL NLIGQFGVGF
201: YSVYLVADYV EVISKHNDDK QYVWESKADG AFAISEDTWN EPLGRGTEIR LHLRDEAGEY LDELKLKELV KKYSEFINFP INLWASKEVE KEVPADEDES
301: IDEEDTSESS SSEEEGEEED EKKPKTKTVK ETTYEWELLN DMKAIWLRSP KEVTDEEYNK FYHSLAKDFS EDKPMAWSHF NAEGDVEFKA VLFIPPKAPH
401: DLYESYYNTK QSNLKLYVRR VFISDEFNEL LPKYLNFLMG LVDSDTLPLN VSREMLQQHS SLKTIKKKLI RKALDMIRKL AEEDPDETND KEKRDVEESS
501: EENEKKGQYA KFWNEFGKSI KLGIIEDATN RNRLAKLLRF ETTKSDGKLT SLDQYISRMK SSQKDIFYIT GASKEQLEKS PFLERLNKKD YEVILFTDPV
601: DEYLMQYLMD YEDKKFQNVS KEGLKLKDSK TKELKESFKG LTKWWKTTLA SDNVEDVKIS NRLADTPCVV VTSKYGWSAY MEKIMHSQTL SDASKQAYMR
701: GKRVLEINPR HPIIKALRER VVTDPEDESV KLTAKLIYQT ALMESGFDLS DPKDFASHIY SSVKSSLNIS PDATVEEEED EAEEPEIETK AEEESASEES
801: ELKDEL

Best Arabidopsis Sequence Match ( AT4G24190.1 )
(BLAST)

001: MRKRTLVSVL FLFSLLFLLP DQGRKLHANA EESSDDVTDP PKVEEKIGGH GGLSTDSDVV HRESESMSKK TLRSNAEKFE FQAEVSRLMD IIINSLYSNK
101: DIFLRELISN ASDALDKIRF LALTDKDVLG EGDTAKLEIQ IKLDKAKKIL SIRDRGIGMT KEDLIKNLGT IAKSGTSAFV EKMQSSGDLN LIGQFGVGFY
201: SAYLVADYIE VISKHNDDSQ YVWESKANGK FAVSEDTWNE PLGRGTEIRL HLRDEAGEYL EESKLKELVK RYSEFINFPI SLWASKEVET EVPVEEDESA
301: DEETETTSTE EEKEEDAEEE DGEKKQKTKK VKETVYEWEL LNDVKAIWLR SPKEVTEEEY TKFYHSLSKD FTDEKPMAWS HFNAEGDVEF KAVLYVPPKA
401: PHDLYESYYN SNKANLKLYV RRVFISDEFD ELLPKYLSFL KGLVDSDTLP LNVSREMLQQ HSSLKTIKKK LIRKALDMIR KLAEEDPDEI HDDEKKDVEK
501: SGENDEKKGQ YTKFWNEFGK SVKLGIIEDA ANRNRLAKLL RFETTKSDGK LTSLDQYIKR MKKSQKDIFY ITGSSKEQLE KSPFLERLIK KGYEVIFFTD
601: PVDEYLMQYL MDYEDKKFQN VSKEGLKVGK DSKDKELKEA FKELTKWWKG NLASENVDDV KISNRLADTP CVVVTSKFGW SANMERIMQS QTLSDANKQA
701: YMRGKRVLEI NPRHPIIKEL KDRIASDPED ESVKETAQLM YQTALIESGF ILTDPKDFAA RIYNSVKSGL NISPDAVADE EIEAAEEPET SEATETKSDD
801: LAGGLNIEAE PVEQQEENTK DEL

Arabidopsis Description

HSP90-7Endoplasmin homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9STX5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.