Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G271000.1 | Wheat | cytosol | 85.92 | 88.48 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 83.39 | 86.84 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 83.03 | 86.47 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 89.17 | 84.59 |
| Os02t0702800-01 | Rice | cytosol | 73.65 | 76.4 |
| Zm00001d017756_P001 | Maize | extracellular | 63.54 | 70.97 |
| EES05663 | Sorghum | cytosol | 68.59 | 70.9 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 52.71 | 53.28 |
| KRH07229 | Soybean | endoplasmic reticulum | 52.35 | 53.11 |
| KRH39570 | Soybean | cytosol | 51.99 | 52.75 |
| KRH07476 | Soybean | cytosol | 51.99 | 52.75 |
| KRH74378 | Soybean | cytosol | 51.62 | 52.38 |
| Solyc06g062360.2.1 | Tomato | cytosol | 51.26 | 52.01 |
| PGSC0003DMT400043211 | Potato | cytosol | 51.26 | 52.01 |
| Solyc08g005200.2.1 | Tomato | cytosol | 50.9 | 51.65 |
| Solyc11g066910.1.1 | Tomato | plastid | 50.54 | 51.28 |
| Solyc08g076540.2.1 | Tomato | nucleus | 50.54 | 51.28 |
| PGSC0003DMT400038357 | Potato | cytosol | 50.54 | 51.28 |
| AT5G46860.1 | Thale cress | cytosol | 48.38 | 50.0 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 49.82 | 49.64 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 11.19 | 49.21 |
| CDY43620 | Canola | cytosol | 46.93 | 48.69 |
| CDY33485 | Canola | cytosol | 47.29 | 48.52 |
| Bra024989.1-P | Field mustard | cytosol | 47.29 | 48.52 |
| CDX77702 | Canola | cytosol | 47.29 | 48.34 |
| Bra022073.1-P | Field mustard | cytosol | 46.57 | 48.31 |
| Bra040178.1-P | Field mustard | cytosol | 48.01 | 48.19 |
| CDX78796 | Canola | cytosol | 48.01 | 48.19 |
| Bra012645.1-P | Field mustard | cytosol | 47.65 | 47.48 |
| CDX90452 | Canola | cytosol | 47.65 | 47.48 |
| CDY01478 | Canola | cytosol | 47.29 | 47.29 |
| CDY37158 | Canola | cytosol | 45.49 | 47.19 |
| CDY60786 | Canola | cytosol | 46.21 | 46.89 |
| AT4G17730.2 | Thale cress | cytosol | 43.68 | 46.18 |
| CDY01290 | Canola | cytosol | 44.77 | 46.1 |
| PGSC0003DMT400068230 | Potato | cytosol | 50.18 | 45.87 |
| CDX78712 | Canola | cytosol, plastid | 45.49 | 45.65 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 45.49 | 45.65 |
| CDX93845 | Canola | cytosol | 43.32 | 45.63 |
| CDY38084 | Canola | cytosol | 32.13 | 45.18 |
| CDY16976 | Canola | cytosol, plastid | 44.77 | 44.93 |
| Bra023256.1-P | Field mustard | cytosol | 42.6 | 44.87 |
| PGSC0003DMT400045973 | Potato | cytosol | 21.66 | 44.78 |
| CDX70720 | Canola | cytosol, plastid | 44.4 | 44.57 |
| CDX69417 | Canola | cytosol, plastid | 44.04 | 43.73 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 44.04 | 43.73 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 43.32 | 43.01 |
| Solyc06g072760.2.1 | Tomato | cytosol | 38.27 | 37.46 |
| PGSC0003DMT400069241 | Potato | cytosol | 32.13 | 33.46 |
| AT1G32270.1 | Thale cress | nucleus | 34.66 | 23.08 |
| CDY03181 | Canola | cytosol | 20.22 | 21.46 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin_N | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS6B01G298100 | EnsemblPlants:TraesCS6B01G298100.3 | TIGR:cd15840 | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:534951409..534955352
Molecular Weight (calculated)
30611.3 Da
IEP (calculated)
6.158
GRAVY (calculated)
-0.383
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFADLESGA LQAPRRGRGA DATRALVFQI TTAVSSYRRL LNSLGTPKDT PALRDQLQKT SHKVLQLAKD AKEKLTSAAE ADKSTGTSAD KRVADMKLAK
101: DFAATMEEFR KLQNLAIQRE MAYKPVVPQS AQPSYTTNDG RSDFDKMPEQ RALLAEPNRL EVLQLDNEIV FNEAIIEERD QAIQDIQQQI GEVHEAFKDL
201: ATLVHAQGGI IEEVDSNIEN SAAATSEAKK EIGKASKTQK SNSSLVSQTC TNYRIVTVLA IFFTLPIHFM CSFACLW
101: DFAATMEEFR KLQNLAIQRE MAYKPVVPQS AQPSYTTNDG RSDFDKMPEQ RALLAEPNRL EVLQLDNEIV FNEAIIEERD QAIQDIQQQI GEVHEAFKDL
201: ATLVHAQGGI IEEVDSNIEN SAAATSEAKK EIGKASKTQK SNSSLVSQTC TNYRIVTVLA IFFTLPIHFM CSFACLW
001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILL
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILL
Arabidopsis Description
SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.