Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G059100.1 | Wheat | cytosol | 98.71 | 98.71 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 98.28 | 98.28 |
| Os02t0119400-01 | Rice | plasma membrane | 84.05 | 84.05 |
| KXG27212 | Sorghum | cytosol | 82.76 | 83.12 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 81.47 | 81.82 |
| Zm00001d002148_P002 | Maize | cytosol | 81.03 | 81.39 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 95.69 | 73.51 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 26.29 | 70.93 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 68.97 | 68.67 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 45.69 | 67.95 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 45.69 | 67.95 |
| KRH14303 | Soybean | endoplasmic reticulum | 67.24 | 67.24 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 64.66 | 65.79 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 65.09 | 62.92 |
| CDY35073 | Canola | cytosol | 62.5 | 62.5 |
| Bra026074.1-P | Field mustard | cytosol | 62.5 | 62.5 |
| CDY33349 | Canola | cytosol | 62.07 | 62.07 |
| CDY49743 | Canola | cytosol | 61.64 | 61.11 |
| Bra008425.1-P | Field mustard | cytosol | 61.64 | 61.11 |
| KRG98671 | Soybean | endoplasmic reticulum | 65.95 | 60.96 |
| Bra026727.1-P | Field mustard | cytosol | 61.21 | 60.94 |
| CDX81754 | Canola | cytosol | 61.21 | 60.94 |
| CDY52847 | Canola | cytosol | 60.78 | 60.52 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 12.5 | 60.42 |
| CDY68585 | Canola | cytosol | 60.34 | 59.32 |
| AT1G16240.1 | Thale cress | cytosol | 59.05 | 59.05 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 18.53 | 58.9 |
| KRH73827 | Soybean | plastid | 16.81 | 56.52 |
| PGSC0003DMT400072222 | Potato | cytosol | 55.6 | 55.84 |
| Solyc10g081060.1.1 | Tomato | plastid | 53.45 | 55.61 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 60.34 | 53.03 |
| Bra035128.1-P | Field mustard | cytosol | 58.62 | 49.63 |
| AT1G16230.1 | Thale cress | cytosol | 37.93 | 45.6 |
| AT1G16225.2 | Thale cress | cytosol | 38.36 | 39.91 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 68.53 | 32.58 |
Protein Annotations
| EnsemblPlants:TraesCSU01G121500.1 | EnsemblPlantsGene:TraesCSU01G121500 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF148 | PFAM:PF05739 | PFscan:PS50192 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF58038 | TIGR:cd15841 | TMHMM:TMhelix | MapMan:22.7.4.1 | : | : |
Description
No Description!
Coordinates
chrUn:+:103781837..103784445
Molecular Weight (calculated)
25727.3 Da
IEP (calculated)
8.723
GRAVY (calculated)
-0.253
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSADPWVR EYGEAARLAD DVAAMVADRA ALPQSGPEVM RHTSAIRRKI TILGTRLDSL EGMLARLPPK SITDKELNKH RDTLSNLKSR AKQMAESFNM
101: STFANREDLL GQSKKAADDM NRVAGLDNQG IVGLQRQIMK EQDEGLEKLE QTVLSTKHIA LAVNEELDLH ARLIDDLDDH VDGTNSRLQR VQKRLAVLNK
201: RAKGGCSCMS LLLSTVGIVM LVVIVWLLIK YL
101: STFANREDLL GQSKKAADDM NRVAGLDNQG IVGLQRQIMK EQDEGLEKLE QTVLSTKHIA LAVNEELDLH ARLIDDLDDH VDGTNSRLQR VQKRLAVLNK
201: RAKGGCSCMS LLLSTVGIVM LVVIVWLLIK YL
001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
Arabidopsis Description
SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.