Factsheet for Os02t0119400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os01t0963300-01
Os04t0471300-01
Os05t0520100-00
Os08t0497900-01
Os09t0481300-01
Os11t0168100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	Os01t0963300-01	AT1G28490.1	21798944
AT1G16240.1	Os11t0168100-01	AT1G28490.1	21798944
AT1G16240.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G16240.1	Os05t0520100-00	AT3G16310.1	21798944
AT1G16240.1	Os04t0471300-01	AT4G26455.1	21798944
AT1G16240.1	Os08t0497900-01	AT4G26455.1	21798944
AT1G16240.1	Os09t0481300-01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27212	Sorghum	cytosol	90.09	90.48
Zm00001d050146_P001	Maize	extracellular, mitochondrion	89.66	90.04
Os08t0277900-01	Rice	plasma membrane	89.22	89.22
Zm00001d002148_P002	Maize	cytosol	88.79	89.18
TraesCS6A01G059100.1	Wheat	cytosol	85.34	85.34
TraesCS6B01G079400.1	Wheat	cytosol	85.34	85.34
TraesCSU01G121500.1	Wheat	cytosol	84.05	84.05
GSMUA_Achr6P34260_001	Banana	cytosol	72.41	72.1
KRH14303	Soybean	endoplasmic reticulum	68.1	68.1
VIT_00s0582g00030.t01	Wine grape	mitochondrion	45.69	67.95
VIT_00s0227g00170.t01	Wine grape	mitochondrion	45.69	67.95
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	66.38	67.54
HORVU6Hr1G011180.1	Barley	mitochondrion	84.48	64.9
CDY33349	Canola	cytosol	64.66	64.66
VIT_00s2887g00010.t01	Wine grape	cytosol	13.36	64.58
VIT_00s1613g00010.t01	Wine grape	cytosol	20.26	64.38
CDY35073	Canola	cytosol	64.22	64.22
Bra026074.1-P	Field mustard	cytosol	64.22	64.22
Bra026727.1-P	Field mustard	cytosol	64.22	63.95
VIT_19s0090g01300.t01	Wine grape	cytosol	65.95	63.75
CDY52847	Canola	cytosol	63.79	63.52
KRG98671	Soybean	endoplasmic reticulum	68.1	62.95
CDX81754	Canola	cytosol	62.93	62.66
CDY49743	Canola	cytosol	62.5	61.97
Bra008425.1-P	Field mustard	cytosol	62.5	61.97
AT1G16240.1	Thale cress	cytosol	60.78	60.78
PGSC0003DMT400072222	Potato	cytosol	60.34	60.61
CDY68585	Canola	cytosol	61.21	60.17
Solyc10g081060.1.1	Tomato	plastid	57.33	59.64
HORVU4Hr1G023890.1	Barley	cytosol	21.98	59.3
AT1G79590.3	Thale cress	golgi, plasma membrane	62.07	54.55
Bra035128.1-P	Field mustard	cytosol	60.78	51.46
KRH73827	Soybean	plastid	14.66	49.28
AT1G16230.1	Thale cress	cytosol	40.09	48.19
AT1G16225.2	Thale cress	cytosol	40.09	41.7
GSMUA_Achr9P03240_001	Banana	cytosol	73.71	35.04

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	EntrezGene:4328103	EMBL:AK060055	EMBL:AK102774	ProteinID:BAD07621.1
ProteinID:BAD08125.1	ProteinID:BAF07615.1	ProteinID:BAS76690.1	ncoils:Coil	ProteinID:EAZ21521.1	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201
GO:GO:0048278	InterPro:IPR000727	EnsemblPlantsGene:Os02g0119400	EnsemblPlants:Os02t0119400-01	PFAM:PF05739	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF148	UniProt:Q6YUT2	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0000236759	RefSeq:XP_015626626.1	:	:	:

Description

Similar to Syntaxin 52 (AtSYP52). (Os02t0119400-01)

Coordinates

chr2:-:1022192..1024747

Molecular Weight (calculated)

25952.6 Da

IEP (calculated)

9.176

GRAVY (calculated)

-0.227

Length

232 amino acids

Sequence
(BLAST)

001: MASSSDPWVR EYSEASRLAD DVTSMIADRG SLPQSGPEIM RHTSAIRRKI TILGTRLDSL EALLSRIPPK SITDKELHKR QDMLSNLKSR AKQMATSFNM
101: SNFANREDLL GQSKKAADDM SRVAGLDNQG IVSLQRQVMK EQDEGLEKLE ETVLSTKHIA LAVNEELTLH TRLIDDLDDY VDVTNSRLQR VQKRLAILNK
201: RVKGGCSCMA LLISVVAIVF LAVIAWLLIK HL

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.