Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 2
- vacuole 2
- extracellular 2
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14303 | Soybean | endoplasmic reticulum | 63.77 | 18.97 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 59.42 | 17.98 |
| TraesCS6A01G059100.1 | Wheat | cytosol | 57.97 | 17.24 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 57.97 | 17.24 |
| KXG27212 | Sorghum | cytosol | 56.52 | 16.88 |
| Bra026074.1-P | Field mustard | cytosol | 56.52 | 16.81 |
| TraesCSU01G121500.1 | Wheat | cytosol | 56.52 | 16.81 |
| CDY33349 | Canola | cytosol | 56.52 | 16.81 |
| CDY35073 | Canola | cytosol | 56.52 | 16.81 |
| Solyc07g065030.2.1 | Tomato | plastid | 50.72 | 16.75 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 55.07 | 16.45 |
| Zm00001d002148_P002 | Maize | cytosol | 55.07 | 16.45 |
| KRG98671 | Soybean | endoplasmic reticulum | 59.42 | 16.33 |
| CDX81754 | Canola | cytosol | 55.07 | 16.31 |
| TraesCS5A01G062300.1 | Wheat | cytosol | 53.62 | 15.95 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 53.62 | 15.95 |
| CDY52847 | Canola | cytosol | 53.62 | 15.88 |
| Bra026727.1-P | Field mustard | cytosol | 53.62 | 15.88 |
| Bra008425.1-P | Field mustard | cytosol | 53.62 | 15.81 |
| CDY49743 | Canola | cytosol | 53.62 | 15.81 |
| Os08t0277900-01 | Rice | plasma membrane | 52.17 | 15.52 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 53.62 | 15.29 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 50.72 | 15.02 |
| CDY68585 | Canola | cytosol | 50.72 | 14.83 |
| AT1G16240.1 | Thale cress | cytosol | 49.28 | 14.66 |
| Os02t0119400-01 | Rice | plasma membrane | 49.28 | 14.66 |
| PGSC0003DMT400057423 | Potato | cytosol | 49.28 | 14.59 |
| TraesCS5D01G073500.2 | Wheat | cytosol | 53.62 | 14.34 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 50.72 | 13.26 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 57.97 | 13.24 |
| Bra035128.1-P | Field mustard | cytosol | 46.38 | 11.68 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 52.17 | 7.38 |
| AT1G16225.2 | Thale cress | cytosol | 23.19 | 7.17 |
| AT1G16230.1 | Thale cress | cytosol | 11.59 | 4.15 |
| PGSC0003DMT400033466 | Potato | endoplasmic reticulum | 8.7 | 2.24 |
| Solyc12g014550.1.1 | Tomato | cytosol | 4.35 | 1.96 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 1.45 | 1.16 |
Protein Annotations
| EMBL:ACUP02001288 | EnsemblPlants:KRH73827 | EnsemblPlantsGene:GLYMA_02G295700 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF148 | ProteinID:KRH73827 | ProteinID:KRH73827.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00023BC65F | UniProt:I1JJF0 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr2:+:47369497..47370155
Molecular Weight (calculated)
7616.9 Da
IEP (calculated)
10.830
GRAVY (calculated)
0.670
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MQGFCLSTCS SRSMSISIKK MTTRSNRVQK NLAVLNKRAK GGCSCMCMLL SMVGIVALVV IIWLLVKYL
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.