CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH22653
KRH23409
KRH26664
KRH31520
KRH56393
KRH62532
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	KRG97393	AT1G27300.1	21798944
AT1G28490.1	KRH31520	AT1G27300.1	21798944
AT1G28490.1	KRH76090	AT1G27300.1	21798944
AT1G28490.1	KRH09922	AT3G16310.1	21798944
AT1G28490.1	KRH23409	AT3G16310.1	21798944
AT1G28490.1	KRH56393	AT4G26455.1	21798944
AT1G28490.1	KRH62532	AT4G26455.1	21798944
AT1G28490.1	KRH22653	AT5G22290.1	21798944
AT1G28490.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089150.1.1	Tomato	cytosol	21.29	33.33
KRH14393	Soybean	cytosol, golgi, nucleus	34.65	28.93
KRH73753	Soybean	cytosol, golgi, nucleus	34.16	28.51
KRG98757	Soybean	cytosol, golgi, nucleus	32.67	26.83
KRH46186	Soybean	cytosol, golgi, nucleus	32.67	26.83
TraesCS3B01G577200.1	Wheat	cytosol	28.71	24.79
TraesCS3D01G516200.1	Wheat	cytosol	28.22	24.36
TraesCS3A01G508800.1	Wheat	cytosol	28.22	24.36
PGSC0003DMT400039964	Potato	nucleus	29.21	23.89
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	27.72	23.83
HORVU3Hr1G111910.1	Barley	cytosol	27.72	23.83
EES04275	Sorghum	cytosol	27.23	23.71
Os01t0963300-01	Rice	plasma membrane	27.23	23.5
Os11t0168100-01	Rice	plasma membrane	27.23	23.4
EES08039	Sorghum	cytosol, golgi, nucleus	27.23	23.4
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	27.23	23.4
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	25.74	23.32
Bra010866.1-P	Field mustard	cytosol	27.72	22.86
CDX94628	Canola	cytosol, golgi, nucleus	27.72	22.86
CDY15661	Canola	cytosol, golgi, nucleus	27.72	22.86
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	28.71	22.75
GSMUA_Achr6P18060_001	Banana	cytosol	27.72	22.49
Zm00001d048147_P002	Maize	cytosol	27.72	22.22
CDY30816	Canola	nucleus	26.73	22.04
AT1G28490.1	Thale cress	nucleus	26.73	22.04
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	26.73	22.04
CDY34096	Canola	cytosol, golgi, nucleus	26.73	22.04
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	28.22	21.43
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	29.7	20.62
HORVU4Hr1G019940.1	Barley	cytosol	24.26	18.85
GSMUA_Achr10P...	Banana	cytosol	14.85	17.86
CDX90156	Canola	cytosol, nucleus, plasma membrane	27.23	12.47
KRH33360	Soybean	nucleus	6.93	10.45
CDY35752	Canola	nucleus	21.78	10.3
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	1.98	7.69

Protein Annotations

MapMan:35.2	EMBL:ACUP02007344	EnsemblPlantsGene:GLYMA_12G132100	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201
GO:GO:0048278	UniProt:I1LSJ9	EnsemblPlants:KRH25827	ProteinID:KRH25827	ProteinID:KRH25827.1	TMHMM:TMhelix
UniParc:UPI00023D16F4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:14924076..14925623

Molecular Weight (calculated)

23029.3 Da

IEP (calculated)

8.490

GRAVY (calculated)

0.001

Length

202 amino acids

Sequence
(BLAST)

001: MQKQSRKKER MKAVADQNVE ATDQEAESTN SAELITVRCC PLRFCNFTIP PRQIMPKSVR IIPRVCNRNV YKYKESVILM DMNNTSSFLK RKWGRIKTGS
101: AKEFWENNQS LVSILFLSFI LSIGPDRRQD EELDELSLSV QIIGGVGLSI HEELLTLKCV SLFMISEKSA NGHVEGSAND QIMMILGLLA LFIFLFILVF
201: FT

Best Arabidopsis Sequence Match ( AT1G28490.3 )
(BLAST)

001: MAIEAVFTDR KVDELEKAIT VAAKDPSWYG IDEAELEKRR RWTSNARTQV RNVKSGVLAG KVSSGAGHAS EVRRELMRMP NSGEASRYDQ YGGRDDDGFV
101: QSESDRQMLL IKQQDEELDE LSKSVQRIGG VGLTIHDELV AQERIIDELD TEMDSTKNRL EFVQKKVGMV MKKAGAKGQM MMICFLLVLF IILFVLVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.