CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX84933
CDX88803
CDX89333
CDX92368
CDX94330
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	CDX84933	AT1G27300.1	21798944
AT1G28490.1	CDY03907	AT1G27300.1	21798944
AT1G28490.1	CDY15722	AT1G27300.1	21798944
AT1G28490.1	CDY27605	AT1G27300.1	21798944
AT1G28490.1	CDX97739	AT3G16310.1	21798944
AT1G28490.1	CDY30157	AT3G16310.1	21798944
AT1G28490.1	CDX89333	AT4G26455.1	21798944
AT1G28490.1	CDX94330	AT4G26455.1	21798944
AT1G28490.1	CDX70995	AT5G22290.1	21798944
AT1G28490.1	CDX88803	AT5G22290.1	21798944
AT1G28490.1	CDX92368	AT5G22290.1	21798944
AT1G28490.1	CDY09128	AT5G22290.1	21798944
AT1G28490.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	100.0	100.0
CDY30816	Canola	nucleus	98.78	98.78
CDY15661	Canola	cytosol, golgi, nucleus	97.14	97.14
CDX94628	Canola	cytosol, golgi, nucleus	96.73	96.73
AT1G28490.1	Thale cress	nucleus	91.02	91.02
Solyc12g089150.1.1	Tomato	cytosol	37.55	71.32
PGSC0003DMT400039964	Potato	nucleus	68.98	68.42
KRH46186	Soybean	cytosol, golgi, nucleus	68.16	67.89
KRG98757	Soybean	cytosol, golgi, nucleus	68.16	67.89
KRH14393	Soybean	cytosol, golgi, nucleus	65.71	66.53
EES04275	Sorghum	cytosol	62.86	66.38
KRH73753	Soybean	cytosol, golgi, nucleus	65.31	66.12
Os01t0963300-01	Rice	plasma membrane	61.63	64.53
TraesCS3D01G516200.1	Wheat	cytosol	61.22	64.1
TraesCS3B01G577200.1	Wheat	cytosol	61.22	64.1
TraesCS3A01G508800.1	Wheat	cytosol	61.22	64.1
GSMUA_Achr6P18060_001	Banana	cytosol	64.08	63.05
HORVU3Hr1G111910.1	Barley	cytosol	60.0	62.55
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	73.88	62.2
EES08039	Sorghum	cytosol, golgi, nucleus	59.59	62.13
Os11t0168100-01	Rice	plasma membrane	59.59	62.13
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	64.49	61.96
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	57.96	60.43
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	57.96	60.43
Zm00001d048147_P002	Maize	cytosol	61.63	59.92
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	52.65	57.85
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	61.63	56.77
GSMUA_Achr10P...	Banana	cytosol	37.96	55.36
KRH33360	Soybean	nucleus	28.98	52.99
CDX90156	Canola	cytosol, nucleus, plasma membrane	93.88	52.15
CDY35752	Canola	nucleus	88.98	51.05
HORVU4Hr1G019940.1	Barley	cytosol	53.47	50.38
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.39	44.23
KRH25827	Soybean	nucleus	22.04	26.73

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	GO:A0A078H8H8	UniProt:A0A078H8H8	EnsemblPlants:CDY34096
ProteinID:CDY34096	ProteinID:CDY34096.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00056023001	InterPro:IPR000727
PFAM:PF05739	PFAM:PF09177	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397
InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000254249D	SEG:seg	:	:	:	:

Description

BnaA09g27220DBnaA09g27220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8H8]

Coordinates

chrLK032328:-:271087..273123

Molecular Weight (calculated)

27562.1 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.339

Length

245 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSAFHKWE RISPGMGDQV HATKELLANC GSIEWQVDEL EKAITVAAKD PALYGIDEAE LERRRRWTSN ARTQVRNVKT
101: GVLAGKGNAG VGNASEVRLE LMRMPNSSEA NRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV ERIGGVGLTI HDELVAQERI IDELGTEMDS
201: TKNRLDFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.