Factsheet for GSMUA_Achr10P09540_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT1G28490.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT1G28490.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT1G28490.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT1G28490.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT1G28490.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33360	Soybean	nucleus	48.08	18.66
GSMUA_Achr6P18060_001	Banana	cytosol	55.77	11.65
KRH14393	Soybean	cytosol, golgi, nucleus	51.92	11.16
EES08039	Sorghum	cytosol, golgi, nucleus	50.0	11.06
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	53.85	10.98
PGSC0003DMT400039964	Potato	nucleus	51.92	10.93
EES04275	Sorghum	cytosol	48.08	10.78
KRH73753	Soybean	cytosol, golgi, nucleus	50.0	10.74
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	48.08	10.64
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	48.08	10.64
Zm00001d048147_P002	Maize	cytosol	50.0	10.32
TraesCS3D01G516200.1	Wheat	cytosol	46.15	10.26
TraesCS3A01G508800.1	Wheat	cytosol	46.15	10.26
Os01t0963300-01	Rice	plasma membrane	46.15	10.26
Os11t0168100-01	Rice	plasma membrane	46.15	10.21
HORVU4Hr1G019940.1	Barley	cytosol	50.0	10.0
TraesCS3B01G577200.1	Wheat	cytosol	44.23	9.83
Bra010866.1-P	Field mustard	cytosol	46.15	9.8
HORVU3Hr1G111910.1	Barley	cytosol	44.23	9.79
KRG98757	Soybean	cytosol, golgi, nucleus	46.15	9.76
KRH46186	Soybean	cytosol, golgi, nucleus	46.15	9.76
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	48.08	9.4
AT1G28490.1	Thale cress	nucleus	44.23	9.39
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	44.23	9.39
CDX94628	Canola	cytosol, golgi, nucleus	44.23	9.39
CDY15661	Canola	cytosol, golgi, nucleus	44.23	9.39
CDY30816	Canola	nucleus	44.23	9.39
CDY34096	Canola	cytosol, golgi, nucleus	44.23	9.39
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	48.08	8.59
CDX90156	Canola	cytosol, nucleus, plasma membrane	46.15	5.44
CDY35752	Canola	nucleus	44.23	5.39
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	23.08	5.38
KRH25827	Soybean	nucleus	7.69	1.98
Solyc12g089150.1.1	Tomato	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P09540_001	EnsemblPlants:GSMUA_Achr10T09540_001	EnsemblPlantsGene:GSMUA_Achr10G09540_001	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
ncoils:Coil	PFAM:PF09177	SUPFAM:SSF47661	UniParc:UPI0002963BE4	UniProt:M0RGT0	MapMan:35.2

Description

Putative uncharacterized protein Sb05g004120 [Source:GMGC_GENE;Acc:GSMUA_Achr10G09540_001]

Coordinates

chr10:+:19344993..19345429

Molecular Weight (calculated)

6058.1 Da

IEP (calculated)

4.414

GRAVY (calculated)

-0.571

Length

52 amino acids

Sequence
(BLAST)

1: MTPAQDPFYV VKEEIQESIN KLQVTFQQWE QTPSNTERVY TLQNSLLSAV RA

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.