CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX84933
CDX88803
CDX89333
CDX92368
CDX94330
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	CDX84933	AT1G27300.1	21798944
AT1G28490.1	CDY03907	AT1G27300.1	21798944
AT1G28490.1	CDY15722	AT1G27300.1	21798944
AT1G28490.1	CDY27605	AT1G27300.1	21798944
AT1G28490.1	CDX97739	AT3G16310.1	21798944
AT1G28490.1	CDY30157	AT3G16310.1	21798944
AT1G28490.1	CDX89333	AT4G26455.1	21798944
AT1G28490.1	CDX94330	AT4G26455.1	21798944
AT1G28490.1	CDX70995	AT5G22290.1	21798944
AT1G28490.1	CDX88803	AT5G22290.1	21798944
AT1G28490.1	CDX92368	AT5G22290.1	21798944
AT1G28490.1	CDY09128	AT5G22290.1	21798944
AT1G28490.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010866.1-P	Field mustard	cytosol	54.88	98.78
CDX94628	Canola	cytosol, golgi, nucleus	53.51	96.33
CDY15661	Canola	cytosol, golgi, nucleus	53.06	95.51
CDY30816	Canola	nucleus	52.15	93.88
CDY34096	Canola	cytosol, golgi, nucleus	52.15	93.88
AT1G28490.1	Thale cress	nucleus	50.57	91.02
CDY35752	Canola	nucleus	87.53	90.4
Solyc12g089150.1.1	Tomato	cytosol	20.18	68.99
PGSC0003DMT400039964	Potato	nucleus	38.1	68.02
KRH46186	Soybean	cytosol, golgi, nucleus	37.87	67.89
KRG98757	Soybean	cytosol, golgi, nucleus	37.87	67.89
KRH73753	Soybean	cytosol, golgi, nucleus	36.05	65.7
KRH14393	Soybean	cytosol, golgi, nucleus	35.83	65.29
EES04275	Sorghum	cytosol	33.79	64.22
TraesCS3D01G516200.1	Wheat	cytosol	33.33	62.82
TraesCS3B01G577200.1	Wheat	cytosol	33.33	62.82
TraesCS3A01G508800.1	Wheat	cytosol	33.33	62.82
Os01t0963300-01	Rice	plasma membrane	33.11	62.39
GSMUA_Achr6P18060_001	Banana	cytosol	34.92	61.85
HORVU3Hr1G111910.1	Barley	cytosol	32.43	60.85
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	40.14	60.82
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	34.92	60.39
Os11t0168100-01	Rice	plasma membrane	31.75	59.57
EES08039	Sorghum	cytosol, golgi, nucleus	31.75	59.57
Zm00001d048147_P002	Maize	cytosol	33.11	57.94
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	30.84	57.87
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	30.84	57.87
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	28.57	56.5
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	32.88	54.51
GSMUA_Achr10P...	Banana	cytosol	20.41	53.57
KRH33360	Soybean	nucleus	15.87	52.24
HORVU4Hr1G019940.1	Barley	cytosol	29.25	49.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	5.44	46.15
KRH25827	Soybean	nucleus	12.47	27.23

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	GO:A0A078DLK3	EnsemblPlants:CDX90156	ProteinID:CDX90156
ProteinID:CDX90156.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0048193	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00150695001	InterPro:IPR000727
InterPro:OPA3-like	PFAM:PF05739	PFAM:PF07047	PFAM:PF09177	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR12499	PANTHER:PTHR12499:SF7	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
InterPro:Syntaxin-6_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EDD29A	SEG:seg

Description

BnaA08g18280D

Coordinates

chrLK031862:+:391916..396193

Molecular Weight (calculated)

49610.1 Da

IEP (calculated)

8.744

GRAVY (calculated)

-0.377

Length

441 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RVSPGMGDQV HVTKELLANC GSIEWQVDEL EKAVAVAAKD PALYGIDDAE LERRRRWTSN ARTQVRNVKT
101: GVLAGKGSAG AGNASEVRRE LMRMPNSNEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV ERIGGVGLTI HDELVAQERI IDELGTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LFFFFMLLVM MCVVKQKKKM VLPLMKLGTL LVKTISKPLA SQLKHQAKVH PRFRQSIINF
301: AQRNHRVTTQ IQRRIYGHAT DVEIRPLNEE KAVQAAVDLI GELFIFAVGG GVVIFEVQRS SRSEARKEEA RKQELEELRI KDEELEKKMA DLQSKLAEVE
401: ELAKARGLTG IFKVKQQPGS ATKVGSSEKP DAKSSESSSS S

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.