CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH22653
KRH23409
KRH26664
KRH31520
KRH56393
KRH62532
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	KRG97393	AT1G27300.1	21798944
AT1G28490.1	KRH31520	AT1G27300.1	21798944
AT1G28490.1	KRH76090	AT1G27300.1	21798944
AT1G28490.1	KRH09922	AT3G16310.1	21798944
AT1G28490.1	KRH23409	AT3G16310.1	21798944
AT1G28490.1	KRH56393	AT4G26455.1	21798944
AT1G28490.1	KRH62532	AT4G26455.1	21798944
AT1G28490.1	KRH22653	AT5G22290.1	21798944
AT1G28490.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	18.66	48.08
KRH14393	Soybean	cytosol, golgi, nucleus	85.07	47.11
KRH73753	Soybean	cytosol, golgi, nucleus	79.85	44.21
KRH46186	Soybean	cytosol, golgi, nucleus	69.4	37.8
KRG98757	Soybean	cytosol, golgi, nucleus	68.66	37.4
PGSC0003DMT400039964	Potato	nucleus	60.45	32.79
GSMUA_Achr6P18060_001	Banana	cytosol	59.7	32.13
AT1G28490.1	Thale cress	nucleus	55.22	30.2
Os01t0963300-01	Rice	plasma membrane	51.49	29.49
Os11t0168100-01	Rice	plasma membrane	51.49	29.36
EES04275	Sorghum	cytosol	50.75	29.31
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	55.22	29.02
Bra010866.1-P	Field mustard	cytosol	52.99	28.98
CDY34096	Canola	cytosol, golgi, nucleus	52.99	28.98
CDY30816	Canola	nucleus	52.99	28.98
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	52.99	28.98
CDY15661	Canola	cytosol, golgi, nucleus	52.24	28.57
CDX94628	Canola	cytosol, golgi, nucleus	52.24	28.57
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	61.94	28.52
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	50.0	28.51
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	49.25	28.09
TraesCS3D01G516200.1	Wheat	cytosol	47.76	27.35
TraesCS3B01G577200.1	Wheat	cytosol	47.76	27.35
EES08039	Sorghum	cytosol, golgi, nucleus	47.76	27.23
Zm00001d048147_P002	Maize	cytosol	50.75	26.98
TraesCS3A01G508800.1	Wheat	cytosol	47.01	26.92
HORVU3Hr1G111910.1	Barley	cytosol	47.01	26.81
GSMUA_Achr10P...	Banana	cytosol	33.58	26.79
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	52.24	26.32
HORVU4Hr1G019940.1	Barley	cytosol	49.25	25.38
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	35.82	21.52
Solyc12g089150.1.1	Tomato	cytosol	19.4	20.16
CDY35752	Canola	nucleus	50.75	15.93
CDX90156	Canola	cytosol, nucleus, plasma membrane	52.24	15.87
KRH25827	Soybean	nucleus	10.45	6.93

Protein Annotations

EMBL:ACUP02006473	EnsemblPlants:KRH33360	EnsemblPlantsGene:GLYMA_10G118300	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	PFAM:PF09177	ProteinID:KRH33360	ProteinID:KRH33360.1	SUPFAM:SSF47661
UniParc:UPI0006EE11A0	UniProt:A0A0R0HSA0	MapMan:22.7.4.2	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:29951702..29953710

Molecular Weight (calculated)

15438.1 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.746

Length

134 amino acids

Sequence
(BLAST)

001: MPSAQDPFYI VKQEIQESID KLQSTFPQWE KTANAGEQSN LSKKVNGLDK AIFVASRDPS WYGIDGVEVE NRRKWTSDAG TSLNGMHKEL MRIPSSHQTT
101: SNQYAAQDNY DFIESKSDRQ MLLIKRKIYF WSLV

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.