Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- vacuole 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14393 | Soybean | cytosol, golgi, nucleus | 92.98 | 92.98 |
| KRH33360 | Soybean | nucleus | 44.21 | 79.85 |
| KRH46186 | Soybean | cytosol, golgi, nucleus | 79.75 | 78.46 |
| KRG98757 | Soybean | cytosol, golgi, nucleus | 79.75 | 78.46 |
| Solyc12g089150.1.1 | Tomato | cytosol | 37.6 | 70.54 |
| PGSC0003DMT400039964 | Potato | nucleus | 69.83 | 68.42 |
| GSMUA_Achr6P18060_001 | Banana | cytosol | 69.83 | 67.87 |
| AT1G28490.1 | Thale cress | nucleus | 67.36 | 66.53 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 66.53 | 65.71 |
| Bra010866.1-P | Field mustard | cytosol | 66.12 | 65.31 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 66.12 | 65.31 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 66.12 | 65.31 |
| CDX94628 | Canola | cytosol, golgi, nucleus | 66.12 | 65.31 |
| CDY30816 | Canola | nucleus | 65.7 | 64.9 |
| EES04275 | Sorghum | cytosol | 61.57 | 64.22 |
| Os11t0168100-01 | Rice | plasma membrane | 61.98 | 63.83 |
| Os01t0963300-01 | Rice | plasma membrane | 61.16 | 63.25 |
| TraesCS3B01G577200.1 | Wheat | cytosol | 60.74 | 62.82 |
| TraesCS3D01G516200.1 | Wheat | cytosol | 60.33 | 62.39 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 74.79 | 62.2 |
| TraesCS4A01G208100.1 | Wheat | cytosol, golgi, nucleus | 60.33 | 62.13 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 59.92 | 61.97 |
| TraesCS4B01G111700.1 | Wheat | cytosol, golgi, nucleus | 59.92 | 61.7 |
| EES08039 | Sorghum | cytosol, golgi, nucleus | 59.92 | 61.7 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 64.88 | 61.57 |
| HORVU3Hr1G111910.1 | Barley | cytosol | 59.5 | 61.28 |
| GSMUA_Achr10P... | Banana | cytosol | 41.74 | 60.12 |
| Zm00001d048147_P002 | Maize | cytosol | 60.74 | 58.33 |
| TraesCS3A01G508700.1 | Wheat | cytosol, golgi, peroxisome | 53.31 | 57.85 |
| Zm00001d042018_P003 | Maize | cytosol, golgi, nucleus | 61.98 | 56.39 |
| HORVU4Hr1G019940.1 | Barley | cytosol | 57.85 | 53.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 10.74 | 50.0 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 65.7 | 36.05 |
| CDY35752 | Canola | nucleus | 61.16 | 34.66 |
| KRH25827 | Soybean | nucleus | 28.51 | 34.16 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.90 | EntrezGene:100795447 | MapMan:22.7.4.2 | EMBL:ACUP02001288 | EMBL:BT099304 |
| UniProt:C6TNI1 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G291600 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048193 |
| GO:GO:0048278 | InterPro:IPR000727 | EnsemblPlants:KRH73753 | ProteinID:KRH73753 | ProteinID:KRH73753.1 | PFAM:PF05739 |
| PFAM:PF09177 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF150 | SMART:SM00397 | InterPro:SNARE |
| SUPFAM:SSF47661 | SUPFAM:SSF58038 | InterPro:Syntaxin-6_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001B17045 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:47086165..47090150
Molecular Weight (calculated)
27352.5 Da
IEP (calculated)
4.681
GRAVY (calculated)
-0.398
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSAQDPFYV VKQEIQESID KLKSTFHQWE NTADVGERSS LSKEVLASCE SIAWQVDELD KAISVAARDP SWYGIDEVEV ENRRKWTSDA RTQVNKAKRT
101: VEAGKGSNNA SLSGMHRELM RLPSSHQTTS NQYAAQDNDD FIESESDRQM LLIKRQDEEL DELSLSVQRI GGVGLTIHEE LLAQEKIIDE LGNEMDGTSN
201: RLDFVQKKVA MVMKKASAKG QIMMILGLLA MFIFLFILVF FT
101: VEAGKGSNNA SLSGMHRELM RLPSSHQTTS NQYAAQDNDD FIESESDRQM LLIKRQDEEL DELSLSVQRI GGVGLTIHEE LLAQEKIIDE LGNEMDGTSN
201: RLDFVQKKVA MVMKKASAKG QIMMILGLLA MFIFLFILVF FT
001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
Arabidopsis Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.