Factsheet for Bra010866.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra026434.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G28490.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G28490.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G28490.1	Bra026434.1-P	AT4G26455.1	21798944
AT1G28490.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G28490.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G28490.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	95.1	95.1
AT1G28490.1	Thale cress	nucleus	92.24	92.24
Solyc12g089150.1.1	Tomato	cytosol	37.55	71.32
PGSC0003DMT400039964	Potato	nucleus	69.8	69.23
KRH46186	Soybean	cytosol, golgi, nucleus	68.57	68.29
KRG98757	Soybean	cytosol, golgi, nucleus	68.57	68.29
KRH73753	Soybean	cytosol, golgi, nucleus	65.31	66.12
KRH14393	Soybean	cytosol, golgi, nucleus	64.9	65.7
EES04275	Sorghum	cytosol	62.04	65.52
TraesCS3D01G516200.1	Wheat	cytosol	61.22	64.1
TraesCS3B01G577200.1	Wheat	cytosol	61.22	64.1
TraesCS3A01G508800.1	Wheat	cytosol	61.22	64.1
Os01t0963300-01	Rice	plasma membrane	60.82	63.68
GSMUA_Achr6P18060_001	Banana	cytosol	63.27	62.25
HORVU3Hr1G111910.1	Barley	cytosol	59.59	62.13
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	73.47	61.86
EES08039	Sorghum	cytosol, golgi, nucleus	58.37	60.85
Os11t0168100-01	Rice	plasma membrane	58.37	60.85
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	63.27	60.78
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	56.73	59.15
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	56.73	59.15
Zm00001d048147_P002	Maize	cytosol	60.82	59.13
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	52.65	57.85
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	60.41	55.64
CDX90156	Canola	cytosol, nucleus, plasma membrane	98.78	54.88
GSMUA_Achr10P...	Banana	cytosol	36.73	53.57
KRH33360	Soybean	nucleus	28.98	52.99
CDY35752	Canola	nucleus	91.43	52.46
HORVU4Hr1G019940.1	Barley	cytosol	52.65	49.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.8	46.15
KRH25827	Soybean	nucleus	22.86	27.72

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	EnsemblPlantsGene:Bra010866	EnsemblPlants:Bra010866.1	EnsemblPlants:Bra010866.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0048193	GO:GO:0061025
InterPro:IPR000727	UniProt:M4D313	PFAM:PF05739	PFAM:PF09177	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
InterPro:Syntaxin-6_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025456A3	SEG:seg

Description

AT1G28490 (E=2e-090) SYP61, ATSYP61, OSM1 | SYP61 (SYNTAXIN OF PLANTS 61); SNAP receptor

Coordinates

chrA08:-:16842281..16843587

Molecular Weight (calculated)

27550.1 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.364

Length

245 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RVSPGMGDQV HVTKELLANC GSIEWQVDEL EKAVAVAAKD PALYGIDDAE LERRRRWTSN ARTQVRNVKT
101: GVLAGKGSAG AGNASEVRRE LMRMPNSNEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV ERIGGVGLTI HDELVAQERI IDELGTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.