Factsheet for HORVU4Hr1G019940.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT1G28490.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G28490.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G28490.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G28490.1	HORVU2Hr1G081800.3	AT4G26455.1	21798944
AT1G28490.1	HORVU5Hr1G071910.1	AT4G26455.1	21798944
AT1G28490.1	HORVU7Hr1G048940.3	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	83.46	92.34
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	83.08	91.91
Os11t0168100-01	Rice	plasma membrane	74.62	82.55
EES08039	Sorghum	cytosol, golgi, nucleus	73.46	81.28
HORVU3Hr1G111910.1	Barley	cytosol	60.38	66.81
GSMUA_Achr6P18060_001	Banana	cytosol	60.38	63.05
KRH73753	Soybean	cytosol, golgi, nucleus	53.85	57.85
KRH14393	Soybean	cytosol, golgi, nucleus	53.85	57.85
GSMUA_Achr10P...	Banana	cytosol	36.92	57.14
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	55.38	56.47
KRH46186	Soybean	cytosol, golgi, nucleus	51.92	54.88
KRG98757	Soybean	cytosol, golgi, nucleus	51.92	54.88
PGSC0003DMT400039964	Potato	nucleus	51.92	54.66
Solyc12g089150.1.1	Tomato	cytosol	26.54	53.49
CDY34096	Canola	cytosol, golgi, nucleus	50.38	53.47
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	50.38	53.47
CDY30816	Canola	nucleus	50.0	53.06
CDY15661	Canola	cytosol, golgi, nucleus	50.0	53.06
AT1G28490.1	Thale cress	nucleus	50.0	53.06
Bra010866.1-P	Field mustard	cytosol	49.62	52.65
CDX94628	Canola	cytosol, golgi, nucleus	49.62	52.65
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	56.92	50.86
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.0	50.0
KRH33360	Soybean	nucleus	25.38	49.25
CDX90156	Canola	cytosol, nucleus, plasma membrane	49.62	29.25
CDY35752	Canola	nucleus	46.54	28.34
KRH25827	Soybean	nucleus	18.85	24.26

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	UniProt:A0A287NGX1	EMBL:AK355020	EMBL:AK368334
ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:HORVU4Hr1G019940	EnsemblPlants:HORVU4Hr1G019940.1	InterPro:IPR000727	PFAM:PF09177
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	InterPro:T_SNARE_dom	UniParc:UPI000B4616D3	:	:

Description

No Description!

Coordinates

chrchr4H:-:96468765..96481215

Molecular Weight (calculated)

29366.8 Da

IEP (calculated)

5.248

GRAVY (calculated)

-0.631

Length

260 amino acids

Sequence
(BLAST)

001: MTPAQDPFYI VKDEIQDSID KVQDTFNQWK QTPENTGEYV HLTRELLTTC ESVQWQVDEL EKAISVAERD PAYYGLNEVE IGKRRNWTST ARSQVVSVRR
101: NVEAGKHKGA FGRSANPPEL GRSKQHIAQD NDDFIASESD QQMLLMKRQD DELDALSASV QRIGGVGLTI HEELVGQEKL LGELSLDMET TSNRLDFVQK
201: RVAMVLKKAS LKGQIMMIAF LVGLLPNFPK PEKFQKIYIK NQRNKNFSIT EDGPEGGQGP

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.