Factsheet for Os11t0168100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os04t0471300-01
Os05t0520100-00
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	Os02t0509600-01	AT1G27300.1	21798944
AT1G28490.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G28490.1	Os05t0520100-00	AT3G16310.1	21798944
AT1G28490.1	Os04t0471300-01	AT4G26455.1	21798944
AT1G28490.1	Os08t0497900-01	AT4G26455.1	21798944
AT1G28490.1	Os09t0481300-01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	88.51	88.51
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	88.09	88.09
EES08039	Sorghum	cytosol, golgi, nucleus	83.83	83.83
HORVU4Hr1G019940.1	Barley	cytosol	82.55	74.62
Os01t0963300-01	Rice	plasma membrane	71.06	71.37
GSMUA_Achr6P18060_001	Banana	cytosol	71.49	67.47
KRH73753	Soybean	cytosol, golgi, nucleus	63.83	61.98
KRH14393	Soybean	cytosol, golgi, nucleus	63.4	61.57
Solyc12g089150.1.1	Tomato	cytosol	33.62	61.24
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	65.53	60.39
PGSC0003DMT400039964	Potato	nucleus	62.98	59.92
KRG98757	Soybean	cytosol, golgi, nucleus	62.55	59.76
KRH46186	Soybean	cytosol, golgi, nucleus	62.55	59.76
CDY34096	Canola	cytosol, golgi, nucleus	62.13	59.59
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	62.13	59.59
AT1G28490.1	Thale cress	nucleus	62.13	59.59
CDY15661	Canola	cytosol, golgi, nucleus	61.7	59.18
GSMUA_Achr10P...	Banana	cytosol	42.13	58.93
CDY30816	Canola	nucleus	61.28	58.78
CDX94628	Canola	cytosol, golgi, nucleus	61.28	58.78
Bra010866.1-P	Field mustard	cytosol	60.85	58.37
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	67.23	54.3
KRH33360	Soybean	nucleus	29.36	51.49
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.21	46.15
CDX90156	Canola	cytosol, nucleus, plasma membrane	59.57	31.75
CDY35752	Canola	nucleus	54.89	30.21
KRH25827	Soybean	nucleus	23.4	27.23

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	ProteinID:ABA91573.2	EMBL:AK242223	ProteinID:BAT12840.1
ncoils:Coil	ProteinID:EEE51716.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193	GO:GO:0048278
InterPro:IPR000727	EnsemblPlantsGene:Os11g0168100	EnsemblPlants:Os11t0168100-01	PFAM:PF05739	PFAM:PF09177	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	UniProt:Q2RA30	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0000D899C8	SEG:seg

Description

Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1). (Os11t0168100-01)

Coordinates

chr11:+:3290812..3293566

Molecular Weight (calculated)

26681.1 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.211

Length

235 amino acids

Sequence
(BLAST)

001: MASAQDPFYI VKDEIQESIE KIQDTLHQWK QTPENTGEHV HLTKEIIASC ESIQWQVVEL EKAISVAERD PAYYGLNEVE IGKRRNWTST ARNQVVSIRR
101: CVEAGKQKSA FGHSVNPSEL VRSKQHIAQD NDDFIASESD QQMLLIKRQD EELDELSASV QRIGGVGLTI HDELVGQERL LGELSLDMET TTNRLDFVQK
201: RVAMVLKKAS LKGQIMMIAF LVVLFIILFV LVFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.