CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX84933
CDX88803
CDX89333
CDX92368
CDX94330
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	CDX84933	AT1G27300.1	21798944
AT1G28490.1	CDY03907	AT1G27300.1	21798944
AT1G28490.1	CDY15722	AT1G27300.1	21798944
AT1G28490.1	CDY27605	AT1G27300.1	21798944
AT1G28490.1	CDX97739	AT3G16310.1	21798944
AT1G28490.1	CDY30157	AT3G16310.1	21798944
AT1G28490.1	CDX89333	AT4G26455.1	21798944
AT1G28490.1	CDX94330	AT4G26455.1	21798944
AT1G28490.1	CDX70995	AT5G22290.1	21798944
AT1G28490.1	CDX88803	AT5G22290.1	21798944
AT1G28490.1	CDX92368	AT5G22290.1	21798944
AT1G28490.1	CDY09128	AT5G22290.1	21798944
AT1G28490.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15661	Canola	cytosol, golgi, nucleus	98.37	98.37
CDY34096	Canola	cytosol, golgi, nucleus	96.73	96.73
CDY30816	Canola	nucleus	95.51	95.51
AT1G28490.1	Thale cress	nucleus	92.24	92.24
Solyc12g089150.1.1	Tomato	cytosol	37.55	71.32
PGSC0003DMT400039964	Potato	nucleus	68.98	68.42
KRG98757	Soybean	cytosol, golgi, nucleus	68.16	67.89
KRH46186	Soybean	cytosol, golgi, nucleus	68.16	67.89
KRH73753	Soybean	cytosol, golgi, nucleus	65.31	66.12
KRH14393	Soybean	cytosol, golgi, nucleus	64.9	65.7
EES04275	Sorghum	cytosol	62.04	65.52
Os01t0963300-01	Rice	plasma membrane	60.82	63.68
TraesCS3D01G516200.1	Wheat	cytosol	60.41	63.25
TraesCS3B01G577200.1	Wheat	cytosol	60.41	63.25
TraesCS3A01G508800.1	Wheat	cytosol	60.41	63.25
GSMUA_Achr6P18060_001	Banana	cytosol	63.27	62.25
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	73.88	62.2
HORVU3Hr1G111910.1	Barley	cytosol	59.18	61.7
EES08039	Sorghum	cytosol, golgi, nucleus	58.78	61.28
Os11t0168100-01	Rice	plasma membrane	58.78	61.28
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	63.67	61.18
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	57.14	59.57
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	57.14	59.57
Zm00001d048147_P002	Maize	cytosol	60.82	59.13
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	51.84	56.95
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	60.82	56.02
GSMUA_Achr10P...	Banana	cytosol	37.14	54.17
CDX90156	Canola	cytosol, nucleus, plasma membrane	96.33	53.51
KRH33360	Soybean	nucleus	28.57	52.24
CDY35752	Canola	nucleus	91.02	52.22
HORVU4Hr1G019940.1	Barley	cytosol	52.65	49.62
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.39	44.23
KRH25827	Soybean	nucleus	22.86	27.72

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	GO:A0A078E5D7	EnsemblPlants:CDX94628	ProteinID:CDX94628
ProteinID:CDX94628.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00157946001	InterPro:IPR000727	PFAM:PF05739	PFAM:PF09177
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EE0543	SEG:seg

Description

BnaC07g10300D

Coordinates

chrLK031883:+:467482..469137

Molecular Weight (calculated)

27572.1 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.362

Length

245 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSAFHKWE RISPGMGDQV HVTKELLANC GSIEWQVDEL EKAVNVAAKD PALYGIDEAE LERRRRWTSN ARTQVRNVKT
101: GVLAGKGSAG AGNASEVRRE LMRMPNSSEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV ERIGGVGLTI HDELVAQERI IDELGTEMDS
201: TKNRLHFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.