Factsheet for VIT_05s0094g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
vacuole 4
extracellular 2
endoplasmic reticulum 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G28490.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G28490.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT1G28490.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039964	Potato	nucleus	65.64	77.33
Solyc12g089150.1.1	Tomato	cytosol	33.68	75.97
KRH14393	Soybean	cytosol, golgi, nucleus	62.89	75.62
KRH73753	Soybean	cytosol, golgi, nucleus	62.2	74.79
CDY15661	Canola	cytosol, golgi, nucleus	62.54	74.29
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	62.2	73.88
CDX94628	Canola	cytosol, golgi, nucleus	62.2	73.88
CDY34096	Canola	cytosol, golgi, nucleus	62.2	73.88
Bra010866.1-P	Field mustard	cytosol	61.86	73.47
KRG98757	Soybean	cytosol, golgi, nucleus	61.86	73.17
KRH46186	Soybean	cytosol, golgi, nucleus	61.86	73.17
AT1G28490.1	Thale cress	nucleus	61.51	73.06
CDY30816	Canola	nucleus	61.51	73.06
EES04275	Sorghum	cytosol	56.7	71.12
GSMUA_Achr6P18060_001	Banana	cytosol	60.82	71.08
Os01t0963300-01	Rice	plasma membrane	56.36	70.09
TraesCS3D01G516200.1	Wheat	cytosol	56.01	69.66
TraesCS3B01G577200.1	Wheat	cytosol	56.01	69.66
HORVU3Hr1G111910.1	Barley	cytosol	56.01	69.36
TraesCS3A01G508800.1	Wheat	cytosol	55.67	69.23
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	54.3	67.23
Os11t0168100-01	Rice	plasma membrane	54.3	67.23
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	53.95	66.81
EES08039	Sorghum	cytosol, golgi, nucleus	53.26	65.96
Zm00001d048147_P002	Maize	cytosol	56.36	65.08
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	48.8	63.68
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	55.67	63.53
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	57.04	62.41
KRH33360	Soybean	nucleus	28.52	61.94
GSMUA_Achr10P...	Banana	cytosol	35.4	61.31
HORVU4Hr1G019940.1	Barley	cytosol	50.86	56.92
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	8.59	48.08
CDX90156	Canola	cytosol, nucleus, plasma membrane	60.82	40.14
CDY35752	Canola	nucleus	56.7	38.64
KRH25827	Soybean	nucleus	20.62	29.7

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	EntrezGene:100257700	wikigene:100257700	MapMan:22.7.4.2	EMBL:AM459962
ProteinID:CAN72346	ProteinID:CAN72346.1	ProteinID:CCB49399	ProteinID:CCB49399.1	ncoils:Coil	UniProt:F6HB30
EMBL:FN595507	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193
GO:GO:0048278	InterPro:IPR000727	EntrezGene:LOC100257700	wikigene:LOC100257700	PFAM:PF05739	PFAM:PF09177
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TIGR:TC54750	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00021095C1
ArrayExpress:VIT_05s0094g00860	EnsemblPlantsGene:VIT_05s0094g00860	EnsemblPlants:VIT_05s0094g00860.t01	RefSeq:XP_003632086	RefSeq:XP_003632086.1	SEG:seg

Description

No Description!

Coordinates

chr5:-:24193716..24200956

Molecular Weight (calculated)

32910.3 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.259

Length

291 amino acids

Sequence
(BLAST)

001: MHTTNTISIL FYVIVINSER PINLRLSTSR SVDHSGEGNV IDCKMSSAQD PFYIVKEEIQ ESIDKLLSTF HQWERIPVET GEQVHLTKEL LASCESIEWQ
101: VDELDKTISV AAKDPAWYGI DEVELDKRRR WTSTAHTQVS NVKKSVVAGK ESNGTGTANV NGMRREMMRM SNPHQADRSN QYGSQDNDDF ISSESDRQLL
201: LIRRQDEELD VLSASVERIG GVGLTIHEEL LAQEKIIDEL GSEMDSTSNR LDFVQKKVAM VMKKASAKGQ IMMILFLVVL FIVLFVLVFL T

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.