Factsheet for VIT_19s0015g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0229g00130.t01
VIT_00s0912g00010.t01
VIT_02s0012g00510.t01
VIT_03s0038g02520.t01
VIT_05s0020g02970.t01
VIT_06s0004g00110.t01
VIT_06s0004g00440.t01
VIT_06s0009g03520.t01
VIT_06s0009g03660.t01
VIT_07s0005g00140.t01
VIT_07s0031g00110.t01
VIT_07s0130g00480.t01
VIT_07s0151g01130.t01
VIT_08s0007g07390.t01
VIT_09s0054g00710.t01
VIT_09s0054g00930.t01
VIT_11s0149g00310.t01
VIT_11s0206g00100.t01
VIT_13s0019g04080.t01
VIT_14s0068g02030.t01
VIT_14s0083g00730.t01
VIT_16s0050g02650.t01
VIT_18s0001g09670.t01
VIT_18s0089g01410.t01
VIT_19s0014g03800.t01
VIT_19s0015g01790.t01
VIT_19s0085g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26455.1	VIT_09s0054g00710.t01	AT1G16790.1	21798944
AT4G26455.1	VIT_18s0089g01410.t01	AT1G30840.1	21798944
AT4G26455.1	VIT_18s0001g09670.t01	AT1G47200.1	17600715
AT4G26455.1	VIT_09s0054g00930.t01	AT1G50430.1	21798944
AT4G26455.1	VIT_06s0004g00110.t01	AT1G55535.1	21798944
AT4G26455.1	VIT_19s0085g00270.t01	AT1G77350.1	21798944
AT4G26455.1	VIT_06s0009g03520.t01	AT2G03120.1	21798944
AT4G26455.1	VIT_03s0038g02520.t01	AT2G16850.1	21798944
AT4G26455.1	VIT_00s0912g00010.t01	AT2G24290.1	21798944
AT4G26455.1	VIT_11s0206g00100.t01	AT2G24290.1	21798944
AT4G26455.1	VIT_07s0005g00140.t01	AT2G47770.1	21798944
AT4G26455.1	VIT_06s0004g00440.t01	AT3G13520.1	21798944
AT4G26455.1	VIT_14s0068g02030.t01	AT3G27080.1	21798944
AT4G26455.1	VIT_07s0130g00480.t01	AT3G43520.1	21798944
AT4G26455.1	VIT_07s0151g01130.t01	AT3G63200.1	21798944
AT4G26455.1	VIT_00s0229g00130.t01	AT4G17340.1	21798944
AT4G26455.1	VIT_19s0015g01790.t01	AT4G26455.1	17600715
AT4G26455.1	VIT_02s0012g00510.t01	AT5G01430.1	21798944
AT4G26455.1	VIT_14s0083g00730.t01	AT5G11390.1	18591351
AT4G26455.1	VIT_06s0009g03660.t01	AT5G12390.1	21798944
AT4G26455.1	VIT_08s0007g07390.t01	AT5G18150.1	21798944
AT4G26455.1	VIT_11s0149g00310.t01	AT5G18150.1	21798944
AT4G26455.1	VIT_05s0020g02970.t01	AT5G19320.1	17600715
AT4G26455.1	VIT_19s0014g03800.t01	AT5G19320.1	17600715
AT4G26455.1	VIT_16s0050g02650.t01	AT5G24130.1	21798944
AT4G26455.1	VIT_18s0001g09670.t01	AT5G43070.1	17600715
AT4G26455.1	VIT_19s0015g01790.t01	AT5G56210.1	17600715
AT4G26455.1	VIT_13s0019g04080.t01	AT5G60460.1	21798944
AT4G26455.1	VIT_07s0031g00110.t01	AT5G67210.1	21798944
AT5G56210.1	VIT_18s0001g09670.t01	AT1G47200.1	17600715
AT5G56210.1	VIT_19s0015g01790.t01	AT4G26455.1	17600715
AT5G56210.1	VIT_14s0083g00730.t01	AT5G11390.1	18591351
AT5G56210.1	VIT_05s0020g02970.t01	AT5G19320.1	17600715
AT5G56210.1	VIT_19s0014g03800.t01	AT5G19320.1	17600715
AT5G56210.1	VIT_18s0001g09670.t01	AT5G43070.1	17600715
AT5G56210.1	VIT_19s0015g01790.t01	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066170.2.1	Tomato	nucleus	22.48	41.19
KRH62532	Soybean	endoplasmic reticulum	37.78	39.66
KRH56393	Soybean	cytosol	37.3	39.01
AT5G56210.1	Thale cress	nucleus	31.76	38.31
PGSC0003DMT400056956	Potato	nucleus	35.99	36.96
Bra002835.1-P	Field mustard	cytosol, golgi, nucleus	16.29	36.23
CDY17403	Canola	nucleus	16.29	36.23
PGSC0003DMT400022426	Potato	nucleus	34.36	36.01
Bra026434.1-P	Field mustard	nucleus	28.99	35.96
AT4G26455.1	Thale cress	nucleus	28.5	35.79
CDX89333	Canola	nucleus	28.5	35.35
CDX94330	Canola	nucleus	28.01	35.03
CDY32806	Canola	cytosol, golgi, nucleus	15.8	34.77
CDX75706	Canola	cytosol, golgi, nucleus	23.78	34.76
CDY43354	Canola	cytosol, golgi, nucleus	22.31	34.34
Bra001502.1-P	Field mustard	nucleus, plastid	24.43	33.94
Bra039387.1-P	Field mustard	cytosol, golgi, nucleus, plastid	21.99	33.75
CDX82542	Canola	plastid	24.27	33.63
GSMUA_Achr10P...	Banana	cytosol	27.2	33.13
GSMUA_Achr4P01630_001	Banana	cytosol, golgi, nucleus	31.92	32.94
GSMUA_Achr3P04120_001	Banana	nucleus	31.11	32.15
CDY24192	Canola	plastid	15.64	31.68
AT3G13360.2	Thale cress	extracellular, plasma membrane, vacuole	25.9	30.7
Os04t0471300-01	Rice	cytosol, golgi, nucleus	14.5	29.47
Os08t0497900-01	Rice	nucleus	21.66	28.79
TraesCS7D01G238200.1	Wheat	cytosol	24.59	28.12
TraesCS7A01G240200.1	Wheat	cytosol	24.76	27.94
TraesCS2B01G351300.1	Wheat	cytosol, golgi, nucleus	13.52	27.85
TraesCS7B01G135800.1	Wheat	cytosol, golgi, nucleus	24.1	27.51
Os09t0481300-01	Rice	nucleus	23.13	26.95
EER96942	Sorghum	cytosol, golgi, nucleus, plastid	23.78	26.94
TraesCS5A01G257000.1	Wheat	cytosol, golgi, nucleus, plastid	23.78	26.79
Zm00001d020879_P001	Maize	cytosol, golgi, nucleus, plastid	17.43	26.68
EES14314	Sorghum	nucleus	21.99	26.68
HORVU7Hr1G048940.3	Barley	cytosol	24.76	26.62
Zm00001d005997_P002	Maize	plastid	23.29	26.58
TraesCS5D01G265600.1	Wheat	nucleus	23.45	26.09
TraesCS5B01G256500.1	Wheat	cytosol, golgi, nucleus, plastid	23.13	26.01
HORVU5Hr1G071910.1	Barley	nucleus	22.96	25.73
Zm00001d003334_P001	Maize	cytosol, nucleus, plastid	12.87	25.65
OQU81760	Sorghum	nucleus	16.29	23.47
Zm00001d025667_P001	Maize	cytosol	17.26	21.72
HORVU2Hr1G081800.3	Barley	cytosol, nucleus	16.12	21.43
TraesCS2D01G332000.1	Wheat	cytosol	17.26	20.78
TraesCS2A01G331000.1	Wheat	cytosol	17.26	20.78

Protein Annotations

EntrezGene:100251593	wikigene:100251593	MapMan:20.4.2.1.2	EMBL:AM443416	ProteinID:CAN74053	ProteinID:CAN74053.1
ProteinID:CCB62064	ProteinID:CCB62064.1	ncoils:Coil	UniProt:F6I4W9	EMBL:FN596747	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100251593	wikigene:LOC100251593	PANTHER:PTHR34562	PANTHER:PTHR34562:SF1
TIGR:TC54642	TMHMM:TMhelix	UniParc:UPI0001985999	ArrayExpress:VIT_19s0015g01790	EnsemblPlantsGene:VIT_19s0015g01790	EnsemblPlants:VIT_19s0015g01790.t01
unigene:Vvi.9511	RefSeq:XP_002265097	RefSeq:XP_002265097.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:-:10510996..10515870

Molecular Weight (calculated)

67230.6 Da

IEP (calculated)

4.671

GRAVY (calculated)

-0.645

Length

614 amino acids

Sequence
(BLAST)

001: MDLGRECLGH EESESIEDNE LNPDRISLVE DTKINNNGSC AIEKVSSGGE FVDANVLAPD AKGKDDQQIV EPLDSPSTVP TKSPGLFGGS NPTTKGYGLK
101: KWRRIRRDFV KDSSVSVDSS KMLKRGLSGS LNPAKPPYLS EIKQNSEGSV GSANILVKNS GVNDHLAAHA SSSDSRFAVG STFTAGTDSE NSEDRSSKSS
201: TAASAPKARH DMNAVLGHAR DKNRMKNLSG KSSGNSIQRV QQGKPRTETS KKPRGERVKI EKENSHSSME SDSRSSNFVF MQGNFSANSN GKQSGTLTNY
301: DGENSDEAQA GEKQFGEELQ TGYSKETVGE VEDLSLDDLA ADLPWEVKEE KGETDQPLID QDPLVDSILA LQSVQEALER EVQKFGEIAK EPISVCNSSI
401: KDSSSADFAS MGPEIHEASS SCQLSSEETR QSDSCFMETQ MHSLKQNISS LESKLEEATA MLKVKEYRIV ELEESGSAIE LQQKQCREME TELEDLFKQK
501: IEAEVEYLTL TRTIQKLRAG DQIMIYEEQK ALAGEQAQML NKLGEAEGKA AMLKKQAEKL ETYCGDILGS EEVMKMEKRL CKVTLCFLIQ LLLLLAFGLF
601: VFQLPPHSSV VVPT

Best Arabidopsis Sequence Match ( AT5G56210.1 )
(BLAST)

001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT

Arabidopsis Description

WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.