Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16790.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59237 | Soybean | cytosol | 55.22 | 53.24 |
| KRH43091 | Soybean | cytosol, nucleus, plastid | 54.48 | 52.52 |
| GSMUA_Achr5P21980_001 | Banana | nucleus | 52.24 | 48.61 |
| AT1G16790.1 | Thale cress | cytosol | 48.51 | 45.14 |
| PGSC0003DMT400011859 | Potato | nucleus | 52.24 | 44.87 |
| Solyc12g099960.1.1 | Tomato | cytosol | 52.24 | 44.87 |
| Bra026026.1-P | Field mustard | cytosol | 47.01 | 41.72 |
| CDY35117 | Canola | cytosol | 47.01 | 41.72 |
| CDY40034 | Canola | cytosol | 46.27 | 41.06 |
Protein Annotations
| EntrezGene:100242841 | wikigene:100242841 | MapMan:35.2 | EMBL:AM467642 | ProteinID:CAN63741 | ProteinID:CAN63741.1 |
| ProteinID:CCB45059 | ProteinID:CCB45059.1 | UniProt:F6GYM3 | EMBL:FN594972 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009941 | GO:GO:0016020 | EntrezGene:LOC100242841 | wikigene:LOC100242841 | TIGR:TC57323 | UniParc:UPI000198400A |
| ArrayExpress:VIT_09s0054g00710 | EnsemblPlantsGene:VIT_09s0054g00710 | EnsemblPlants:VIT_09s0054g00710.t01 | unigene:Vvi.12809 | RefSeq:XP_002265895 | RefSeq:XP_002265895.1 |
Description
No Description!
Coordinates
chr9:+:21536098..21536891
Molecular Weight (calculated)
14545.6 Da
IEP (calculated)
10.619
GRAVY (calculated)
-0.379
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPLTPSAI PSSQPPPRTQ KRKLPTPKEL IAHYESQGME PQEASLKVID DLQTALFRVI SSGRGKKDRF TMDASRKLDT ANARLAILEM KLDSKPGYPQ
101: TLALGVASAG IASALPHVFG AFSQIWSSVR SASK
101: TLALGVASAG IASALPHVFG AFSQIWSSVR SASK
001: MKQPATPNAA EETKSEQKQK SKKFPTPTEL ISHYQKRGLE PAEASIKVIE DLQNALVRVV SSSRNASSKD KLVTDARKID AINGRLAVVD AKLETKPGYV
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
Arabidopsis Description
At1g16790 [Source:UniProtKB/TrEMBL;Acc:Q6NQG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.