Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- peroxisome 1
- golgi 1
- plasma membrane 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16790.1 | KRH22653 | AT5G22290.1 | 21798944 |
| AT1G16790.1 | KRH26664 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59237 | Soybean | cytosol | 90.65 | 90.65 |
| VIT_09s0054g00710.t01 | Wine grape | cytosol, plastid | 52.52 | 54.48 |
| AT1G16790.1 | Thale cress | cytosol | 50.36 | 48.61 |
| Bra026026.1-P | Field mustard | cytosol | 51.8 | 47.68 |
| CDY35117 | Canola | cytosol | 51.8 | 47.68 |
| CDY40034 | Canola | cytosol | 51.08 | 47.02 |
| PGSC0003DMT400011859 | Potato | nucleus | 48.92 | 43.59 |
| Solyc12g099960.1.1 | Tomato | cytosol | 48.92 | 43.59 |
| GSMUA_Achr5P21980_001 | Banana | nucleus | 42.45 | 40.97 |
Protein Annotations
| EMBL:ACUP02004847 | EMBL:BT092557 | EnsemblPlants:KRH43091 | EnsemblPlantsGene:GLYMA_08G130400 | EntrezGene:100527692 | ProteinID:KRH43091 |
| ProteinID:KRH43091.1 | SEG:seg | UniParc:UPI0001B15C99 | UniProt:C6T545 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr8:+:10017317..10018698
Molecular Weight (calculated)
14955.3 Da
IEP (calculated)
10.155
GRAVY (calculated)
-0.121
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: METPTVTIPK IGPKPSKKLK LPTPKELISH YESQGMDSQD ASLKVIEDLQ KALFGVISSG KGKHDKLLTE SSRKIDAISN RLTVLDMKLD SKPGYVETFA
101: IGLASGAALK GIGAIVPHII APLFQIWNSV FTATKSSPQ
101: IGLASGAALK GIGAIVPHII APLFQIWNSV FTATKSSPQ
001: MKQPATPNAA EETKSEQKQK SKKFPTPTEL ISHYQKRGLE PAEASIKVIE DLQNALVRVV SSSRNASSKD KLVTDARKID AINGRLAVVD AKLETKPGYV
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
Arabidopsis Description
At1g16790 [Source:UniProtKB/TrEMBL;Acc:Q6NQG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.