CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16790.1	CDX70995	AT5G22290.1	21798944
AT1G16790.1	CDX88803	AT5G22290.1	21798944
AT1G16790.1	CDX92368	AT5G22290.1	21798944
AT1G16790.1	CDY09128	AT5G22290.1	21798944
AT1G16790.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026026.1-P	Field mustard	cytosol	98.68	98.68
CDY40034	Canola	cytosol	95.36	95.36
AT1G16790.1	Thale cress	cytosol	81.46	85.42
KRH43091	Soybean	cytosol, nucleus, plastid	47.68	51.8
KRH59237	Soybean	cytosol	45.7	49.64
VIT_09s0054g00710.t01	Wine grape	cytosol, plastid	41.72	47.01
PGSC0003DMT400011859	Potato	nucleus	39.07	37.82
Solyc12g099960.1.1	Tomato	cytosol	39.07	37.82
GSMUA_Achr5P21980_001	Banana	nucleus	35.76	37.5

Protein Annotations

EnsemblPlants:CDY35117	EnsemblPlantsGene:GSBRNA2T00057997001	ProteinID:CDY35117	ProteinID:CDY35117.1	SEG:seg	UniParc:UPI0001CAABBD
UniProt:A0A078HBI7	MapMan:35.2	:	:	:	:

Description

BnaA06g11270DBnaA06g11270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBI7]

Coordinates

chrLK032346:+:323097..323602

Molecular Weight (calculated)

15868.8 Da

IEP (calculated)

10.182

GRAVY (calculated)

-0.366

Length

151 amino acids

Sequence
(BLAST)

001: MKQPTFPNAA AEETKPEQNQ TAPKQKSKKF PTATELISHY QKQGGLEPAE ASVKVIEDLQ NALVRVASSS KNASSKNKLL ADARKIDAIS GRLAVVDAKL
101: ETKPGYVETF ALGLASGAAL NGISAVWPHV TRGIGQVWSA VKSGTDPSAA S

Best Arabidopsis Sequence Match ( AT1G16790.1 )
(BLAST)

001: MKQPATPNAA EETKSEQKQK SKKFPTPTEL ISHYQKRGLE PAEASIKVIE DLQNALVRVV SSSRNASSKD KLVTDARKID AINGRLAVVD AKLETKPGYV
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS

Arabidopsis Description

At1g16790 [Source:UniProtKB/TrEMBL;Acc:Q6NQG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.