Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16790.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT1G16790.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT1G16790.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT1G16790.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT1G16790.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35117 | Canola | cytosol | 95.36 | 95.36 |
| AT1G16790.1 | Thale cress | cytosol | 80.13 | 84.03 |
| KRH43091 | Soybean | cytosol, nucleus, plastid | 47.02 | 51.08 |
| KRH59237 | Soybean | cytosol | 45.03 | 48.92 |
| VIT_09s0054g00710.t01 | Wine grape | cytosol, plastid | 41.06 | 46.27 |
| PGSC0003DMT400011859 | Potato | nucleus | 38.41 | 37.18 |
| Solyc12g099960.1.1 | Tomato | cytosol | 38.41 | 37.18 |
| GSMUA_Achr5P21980_001 | Banana | nucleus | 34.44 | 36.11 |
Protein Annotations
| EnsemblPlants:CDY40034 | EnsemblPlantsGene:GSBRNA2T00068937001 | ProteinID:CDY40034 | ProteinID:CDY40034.1 | SEG:seg | UniParc:UPI0001CAA2DE |
| UniProt:A0A078HRY7 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g12810DBnaC05g12810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRY7]
Coordinates
chrLK032462:-:181405..181977
Molecular Weight (calculated)
15768.6 Da
IEP (calculated)
10.182
GRAVY (calculated)
-0.297
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQPTFPSAA AEETKSEQNQ TGAKQKSKKF PTATELISHY QKQGGLEAAE ASVKVIEDLQ NALVRVASSS KNASSKSKLL ADARKIDAIS GRLAVVDAKL
101: ETKPGYVETF ALGLASGAAL NGISAVWPHV TRGISQVWSA VKSGTDPSAA S
101: ETKPGYVETF ALGLASGAAL NGISAVWPHV TRGISQVWSA VKSGTDPSAA S
001: MKQPATPNAA EETKSEQKQK SKKFPTPTEL ISHYQKRGLE PAEASIKVIE DLQNALVRVV SSSRNASSKD KLVTDARKID AINGRLAVVD AKLETKPGYV
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
Arabidopsis Description
At1g16790 [Source:UniProtKB/TrEMBL;Acc:Q6NQG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.